Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1678 ATGGCAAGAGAGTTTGGTGGTGGAACATACATAAAGAAGGGGCCATGGAGTGCTGAGGAAGATGAAATTCTCATGAACCATGTCAAGAAGAATGGTCCAAGGGATTGGAGCTCCATTCGGTCCAAAGGGTTGCTGCCCCGAACTGGGAAATCGTGCCGTCTCCGATGGGTGAACAAGCTTAGGCCCAACTTGAAGACAGGGTGCAAATTTTCAGCAGAGGAAGAAAGGGTGGTGATAGAATTGCAAGCACAGTTTGGGAACAAATGGGCCAAAATAGCAACATACTTGGAAGGTCGAACCGACAACGATGTGAAGAATTTCTGGAGTAGCAGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAACCTTCACCTTCAAAGCCTCAGAAAAACAAAGGGAAAGCTACTGTTAGTCAACCACAAGTTGAAGAGGTTCCTTCATGCAGTTCCAATCATCTGGAGGAAAAACTATCAGGCTGCAACCACCTTTCCTTCCCTGCTTCCTCCTATATGGGAAACACAGTGGAGTTCAAGATGGTGACGCCACCGAAGTATCTAAATTTGGAAGCTGAGGAAGTCACCCCACTTCACATGGTACCATCATTTGAGTCTTCTGATTACACTTTGTCTCAAGTACTCCCAGAATCCCACCAACTGGACTTTCCCCTCTTGCCAGACTGCAGTGGCCTCGCCGATCCTGAGCCTTTCGATGCTGACTTTCTCAACATTTTTGAGCAGCAAAAGGTTCCACAATGTGTTTGCAGCAGCAAGAAGCTTGAGACCAAGTTGCCAGGTCTTGCATTGGGAGGAAACGCTGAGAGTTCAAGCCCAGAAAATGGCTTCTTTGAGGACTTTCCCACTGAGATATTTGACTATTTTGAAGATCTTCCAACCTCATCAGAAAAATAA 906 0.4636 MAREFGGGTYIKKGPWSAEEDEILMNHVKKNGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQAQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLQKPSPSKPQKNKGKATVSQPQVEEVPSCSSNHLEEKLSGCNHLSFPASSYMGNTVEFKMVTPPKYLNLEAEEVTPLHMVPSFESSDYTLSQVLPESHQLDFPLLPDCSGLADPEPFDADFLNIFEQQKVPQCVCSSKKLETKLPGLALGGNAESSSPENGFFEDFPTEIFDYFEDLPTSSEK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1678 301 Gene3D - 68 141 - -
Dere08g1678 301 Gene3D - 12 65 - -
Dere08g1678 301 Pfam Myb-like DNA-binding domain 69 109 IPR001005 -
Dere08g1678 301 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Dere08g1678 301 SMART sant 66 114 IPR001005 -
Dere08g1678 301 SMART sant 12 62 IPR001005 -
Dere08g1678 301 MobiDBLite consensus disorder prediction 123 147 - -
Dere08g1678 301 CDD SANT 69 108 IPR001005 -
Dere08g1678 301 CDD SANT 15 60 IPR001005 -
Dere08g1678 301 FunFam Transcription factor GAMYB 68 136 - -
Dere08g1678 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Dere08g1678 301 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Dere08g1678 301 MobiDBLite consensus disorder prediction 117 147 - -
Dere08g1678 301 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere08g1678 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Dere08g1678 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere08g1678 301 PANTHER TRANSCRIPTION FACTOR DUO1 7 300 - -
Dere08g1678 301 FunFam MYB transcription factor 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1678 Dere-ChrDere08 22581032 22583231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1678 11 297 MYB Transcription Factor Family AT3G60460 45.307 1.73e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g1678 Myb_DNA-binding 1.4e-11 CL0123