Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1669 ATGGTCTTTGAAGGACAACTAGTTGATCATGATCTAGTGTTGCGGTTAGCTGTTGCAAAGTGGTTCGTCTCTCGCAGTCTAGCCTTCTTCGCCTCTGCCGCTGCAAGACTTATCTCGGGTTCTATTCCAATGGCTTCAGAGAAGAAACTGGCTAACCCCATGAGGGAAATCAAGGTCCAGAAGCTCGTTCTTAATATTTCGGTGGGTGAGAGTGGAGATCGTCTCACCAGAGCTGCTAAGGTGTTGGAGCAGCTTAGTGGTCAAGCCCCAGTATTCTCCAAAGCGAGGTATACTGTTCGTTCCTTCGGTATTAGAAGAAATGAAAAGATTGCGTGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGCGGTCTGAAGGTGAAGGAATATGAACTCCTGAGAAGAAATTTCAGTGATACTGGGTGTTTTGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCGTCTACTGGTATTTATGGAATGGACTTCTATGTTGTTCTGGAGCGCCCAGGTTACCGTGTGGGACGTCGCCGCAGGTGCAAGTCACGTGTTGGGATCCAGCACCGCGTCACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAAGGAGTGATCCTTAACAAGGCCCAGACAATTGTCGGTTAA 678 0.4749 MVFEGQLVDHDLVLRLAVAKWFVSRSLAFFASAAARLISGSIPMASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQAPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTIVG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1669 225 Gene3D - 44 220 IPR022803 -
Dere08g1669 225 FunFam 60S ribosomal protein L11 44 217 - -
Dere08g1669 225 Pfam ribosomal L5P family C-terminus 109 207 IPR031309 -
Dere08g1669 225 ProSitePatterns Ribosomal protein L5 signature. 82 98 IPR020929 GO:0003735|GO:0005840|GO:0006412
Dere08g1669 225 SUPERFAMILY RL5-like 52 216 IPR022803 -
Dere08g1669 225 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 45 219 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dere08g1669 225 Pfam Ribosomal protein L5 52 105 IPR031310 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1669 Dere-ChrDere08 22415488 22418829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1669 44 225 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 93.956 3.97e-129 360