Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1652 ATGTCAAATTCTGGCATGGACTCGAACAATCAAGCTGAAAACTCTTCACATTTTATATCTGCTTTAAAGTCATCGTCTCGTAGAAGCAACTTGTCGAGTCAGTCTAGGGGATCCGATAGGATTTCGGTCCGGGAAGTCACTTTTGGCCATTCAGGATCGAAGCCTGTTCGATATGGGTCAAAAGGCCCTGATTCTGAAGCATTCAGCGTGTCGCAGAAGGAAATCAGCGACGAGGATGCGAGATTGGTTTATATAAATGATCCTGTGAAGACAAACGAGAGGTTTGAATTCGCAGGAAATTCCATACGTACGGGGAAATACTCCATCCTCACCTTTTTGCCGAGGAATTTGTTCGAACAATTTCATAGAGTTGCTTACATTTATTTCCTTGTAATAGCCATTCTTAATCAGCTTCCTCAGCTTGCCGTATTCGGTAGGGGAGTTGCTATTTTGCCTTTAGCCTTTGTTCTGCTCGTTACAGCTGTGAAGGATGCATATGAGGATTGGAGGAGGCATCGGTCAGACAAAGTTGAGAACAACAGGAACATATATGGGTTTCAGGCTAACATGGAAATTGATCAAAAGCGGTTGTCACTTGGATCTTCCAATATTGTTCTTCGAGGCTGTGAGCTCAAGAATACTAATTGGGCCCTTGGTGTTGCTGTATATTGCGGCCGCGAGACCAAAGTTATGCTAAACAGCTCAGGAGCTCCATCGAAGAGGAGCCGGCTGGAGACTCGCATGAACTACGAGATAATCATTCTCTCTTCTTTTCTTGTAGCTTTGTGTACAGTTACTTCTGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTAAATCTCTTGCCATATTATAGAAAGCTGGACGTTTCAGAGGGCGAAGTGAAGAGCTATAAATATTATGGATGGGGATGGGAAATTTTTTTCACATTCCTCATGGCAGTTATAGTGTTCCAGGTCATGATCCCTATATCCTTGTATATTTCCATGGAGCTTGTCCGGGTTGGTCAGGCCTATTTCATGATCCGAGACAACAAAATGTATGATCAGGCTTCAAATTCCAGATTTCAGTGCAGGGCTTTAAATATTAATGAAGATTTAGGGCAAATCAAATATGTTTTCTCAGACAAAACTGGTACACTTACCGAGAACAAGATGGAATTTCAATGTGCGAGCATATGGGGTGTTGACTACAGTAAAACAAAAGCCAGTCAGGAGGACGAGCAAGTTGGATACTCTGTGGAAGGTGCAATTTCTTCTTCAGATAAGATAGTTTGTTCTAATAATAGCAATACCTTTAATGTAACTGGTCTTGTTTATAAATTAACATTGCATACTTTTTTGTGTTTGCTTGCGGTGGATGGAGCAGTTTTGAGGCCCAAGATGAAGGTGAAAGTTGATCCAGAACTTTTGCAATTATCAAAAGGTGGACTTGAAAATAAGGAGGGAAAACAGATTTGTGATTTCTTCCTAGCATTGGCAGCATGCAATACCATTGTTCCTCTTCATGTTGACACATCTGATCCTGAAGTCAAGTTGATAGATTACCAAGGCGAGTCACCTGATGAACAAGCACTGGCATATGCTGCTGCTGCATATGGTTATATGCTTATTGAACGGACCTCAGGCCACATAGTTATAGATATCCAGGGACAGAGACACAGGTTCAATGTCTTGGGTTTGCATGAATTTGATAGTGATAGGAAGAGAATGTCAGTTATATTGGGGTATCCTGACAATTCTGTGAAACTTTTTGTCAAGGGTGCTGATACATCCATGTTAAGTGTAATAGATAAGTTGTCGAACATGGACATAATACGCTCAACTGAAAGGCATCTTCACTCTTATTCTTCGCTGGGGTTGAGAACTCTTGTCATTGGAATGAGGGAACTGAATGCTTCAGAATTTGAGCAATGGCACTTTGCCTTTGAGACAGCAAGCACTGCTTTGATGGGTCGTGCTGCTTTACTTCGTAAGGTTGCTAGCAATATAGAAAACAATCTCTGCATATTGGGTGCATCTGCAATTGAAGATAAATTGCAGCAAGGGGTGCCAGAATCCATTGAATCTCTGAGGACAGCAGGTATTCAGGTATGGGTGTTGACTGGGGACAAACAAGAAACTGCCATATCAATTGGCTACTCCTCAAAGCTCCTAACGAGCAACATGACTCAGATTATAATTAATAGCAACAATAGAGACTCATGTAGAAGGAGTTTACAAGATGCCCTTGACATGTCTAACAGACTCGTGACTGGGTCTGGTGTTACCAATCGAACTGGACAAAGTTCTTATGCTGTTACTACTCTGATAGCGTTGATTATTGATGGTAACAGTCTTGTTTATGTTCTTGACAGTGAACTTGAAGAACAGCTCTTTCAACTGGCAAGAAAATGTTCTGTGGTTCTCTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGGATTGTTACCCTTGTGAAGAACAGGACATCTGACATGACACTAGCCATTGGAGATGGTGCTAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGAATCAGTGGACAGGAGGGCCGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGGCAATTTCGGTTTTTGGTTCCCCTCTTATTAGTGCATGGACACTGGAACTACCAACGGCTAGGTTACATGATACTATACAACTTTTACAGAAATGCTATCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACGACAGCTATAAATGAATGGAGCAGCGTGTTGTATTCAATAATCTACACTTCATTGCCAACTATTGTTGTTGGTATACTTGACAAGGACCTTAGTAAAAGGACCCTTCTAAACTATCCTCAGCTCTATGGAGCTGGGCAGAGACACGAGGCGTACAATAAAAAATTATTTTGGTTGACAATGGTTGATACTTTGTGGCAAAGCATTACTGTCTTCTTTGGTCCTTTCTTCGCATATCGGGGAAGCACTGTTGATGTTTCAAGCATTGGAGATCTTTGGACTCTTGCAGTGGTTATTTTGGTTAATATACATTTGGCTATGGATGTCATCAGGTGGAATTGGATTACTCATGCTTCCATTTGGGGATCTATAGTTGCAACTTTCATTTGTGTCATGATCATTGATGCCATACCTACATTTCCTGGTTACTGGGCCATCTTTAATACCGCAGGCACTGGATTGTTTTGGTTATGTTTGCTCGGAATTGTCATCGCAGCATTGCTTCCTCGTTTCATTGTAAAGTTTATTCATCAATATTACTTTCCTGATGATATCCAAATCTCAAGAGAAGCTGAGAAGGTTGGAAATTCAAGGGTGGTTGAAGGTGGACAGATAGAAATGCATCCTGTTCCAGCAGGTCCACCGAGATGA 3402 0.4174 MSNSGMDSNNQAENSSHFISALKSSSRRSNLSSQSRGSDRISVREVTFGHSGSKPVRYGSKGPDSEAFSVSQKEISDEDARLVYINDPVKTNERFEFAGNSIRTGKYSILTFLPRNLFEQFHRVAYIYFLVIAILNQLPQLAVFGRGVAILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRNIYGFQANMEIDQKRLSLGSSNIVLRGCELKNTNWALGVAVYCGRETKVMLNSSGAPSKRSRLETRMNYEIIILSSFLVALCTVTSVCAAVWLKRHKDELNLLPYYRKLDVSEGEVKSYKYYGWGWEIFFTFLMAVIVFQVMIPISLYISMELVRVGQAYFMIRDNKMYDQASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSKTKASQEDEQVGYSVEGAISSSDKIVCSNNSNTFNVTGLVYKLTLHTFLCLLAVDGAVLRPKMKVKVDPELLQLSKGGLENKEGKQICDFFLALAACNTIVPLHVDTSDPEVKLIDYQGESPDEQALAYAAAAYGYMLIERTSGHIVIDIQGQRHRFNVLGLHEFDSDRKRMSVILGYPDNSVKLFVKGADTSMLSVIDKLSNMDIIRSTERHLHSYSSLGLRTLVIGMRELNASEFEQWHFAFETASTALMGRAALLRKVASNIENNLCILGASAIEDKLQQGVPESIESLRTAGIQVWVLTGDKQETAISIGYSSKLLTSNMTQIIINSNNRDSCRRSLQDALDMSNRLVTGSGVTNRTGQSSYAVTTLIALIIDGNSLVYVLDSELEEQLFQLARKCSVVLCCRVAPLQKAGIVTLVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLFTAFTLTTAINEWSSVLYSIIYTSLPTIVVGILDKDLSKRTLLNYPQLYGAGQRHEAYNKKLFWLTMVDTLWQSITVFFGPFFAYRGSTVDVSSIGDLWTLAVVILVNIHLAMDVIRWNWITHASIWGSIVATFICVMIIDAIPTFPGYWAIFNTAGTGLFWLCLLGIVIAALLPRFIVKFIHQYYFPDDIQISREAEKVGNSRVVEGGQIEMHPVPAGPPR 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1652 1133 NCBIfam HAD-IC family P-type ATPase 803 918 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1652 1133 NCBIfam HAD-IC family P-type ATPase 306 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1652 1133 Gene3D - 373 385 IPR023214 -
Dere08g1652 1133 FunFam Phospholipid-transporting ATPase 517 650 - -
Dere08g1652 1133 Pfam Phospholipid-translocating P-type ATPase C-terminal 860 1099 IPR032630 -
Dere08g1652 1133 Pfam Phospholipid-translocating ATPase N-terminal 83 148 IPR032631 -
Dere08g1652 1133 SUPERFAMILY HAD-like 363 873 IPR036412 -
Dere08g1652 1133 SFLD Haloacid Dehalogenase 360 883 - -
Dere08g1652 1133 Gene3D - 386 434 IPR023299 GO:0000166
Dere08g1652 1133 MobiDBLite consensus disorder prediction 1 44 - -
Dere08g1652 1133 MobiDBLite consensus disorder prediction 1 41 - -
Dere08g1652 1133 Gene3D - 236 372 - -
Dere08g1652 1133 ProSitePatterns E1-E2 ATPases phosphorylation site. 378 384 IPR018303 -
Dere08g1652 1133 SUPERFAMILY Calcium ATPase, transmembrane domain M 97 1099 IPR023298 -
Dere08g1652 1133 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 382 685 IPR023299 GO:0000166
Dere08g1652 1133 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 73 182 - -
Dere08g1652 1133 Gene3D - 202 235 - -
Dere08g1652 1133 NCBIfam phospholipid-translocating P-type ATPase 180 1106 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Dere08g1652 1133 Gene3D - 669 872 IPR023214 -
Dere08g1652 1133 Gene3D - 517 648 IPR023299 GO:0000166
Dere08g1652 1133 PRINTS P-type cation-transporting ATPase superfamily signature 832 851 - -
Dere08g1652 1133 PRINTS P-type cation-transporting ATPase superfamily signature 376 390 - -
Dere08g1652 1133 SFLD p-type atpase 360 883 IPR044492 -
Dere08g1652 1133 FunFam Phospholipid-transporting ATPase 669 872 - -
Dere08g1652 1133 Pfam Cation transport ATPase (P-type) 521 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1652 Dere-ChrDere08 22190873 22196222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1652 6 181 Primary Pumps ATPases AT5G04930 68.182 9.25e-67 244