Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1650 ATGAAGAGGTCTTCTCGTACTTCTTCTTCTTCTTGTTCTTCGCCTTCCTCCTCGTCTTCTTCCTCTGTTGAGTTTCAGAATCCTGATCAAGCAGAGGAGGGAGGGAGGGGGAATCACAAGCGACCCAGAAGGAGTAATAATAATAATAATCAAAGAAGTAATCTCATGAAGTCTCCGAAGCAGAATGCGGGAAGCTCCAGCTCTCCCGGCAGACGGAGCTCCGTTTACAGAGGAGTCACCAGGCATCGATGGACTGGGAGGTTCGAAGCTCATCTTTGGGATAAGAGCTCATGGAACAGCGTCCAGAACAAGAAGGGACGACAAGTTTATTTGGGAGCTTATGATAATGAAGAAGCTGCTGCTCGTACCTACGATCTTGCTGCCCTTAAATATTGGGGAAGAGATTCAACATTGAATTTTCCGATAGAAACATATACGAAGGAGCTTGAGGAAATGGAGAAGGTCACAAAAGAAGAGTACTTAGCTTCACTGAGGAGACAAAGCAGTGGATTTTCAAGAGGGGTTTCCAAGTATCGAGGTGTAGCTAGGCATCATCACAATGGCCGATGGGAGGCTCGAATTGGAAGAGTATTAGGCAACAAGTATCTCTACTTGGGCACATATAGTACTCAAGAGGAGGCAGCTACAGCATATGACTTGGCAGCCATACAGTACAGAGGAGCGAATGCAGTGACCAATTTCGACTTGAGCAGATACATCGACAAGATCACCACCAACACCACCAAGAAGGACGAATCCCAAGAAGAAACAGTGATCACAGTAACTTCACAAGAAGAAGCAGATCCCAATCCATCATCTTCCTCCTCCTGCTTCGAATCAGAAAATCTGACTCTGAATAACCAGAATCAACAACCACAAGAGCACGAAGATCAAGAAATCAAGCCTGAAAATCCCCGTATCAAGCCCACCCTCATGCCTACTCCCAGCGAAGAGTCATCGCCGATTGCTCATCCGAAGTCTTTGGCTGCTGATGAGCAAGAGCTTCCGTGGATCTTCATGGAGGACGACGGATTCTCTCAGTTTCAAGTTCCGGATCTGCCTGACGGCGATTTGCTGAACGTGTACGACGAAAGTGGACGGAGATTCGAGGACGACATTGGTTTTCTGTTCAGGCCGGAGCCCGAGGAGGGCGATTTCAATCTGGACGCGATTTTGAACAGTCCGAGCTATGGAGATCTGGTAATGGCGGATTCCACGACGACGACGGTGGTGGTGGGTGATGATGATTGTGGGCCAAGGAAGTTACTGTGTTCTGCAACTTCTCCTTCTTCTTCACCGAACTCTTCGATTTCTTCTTCTGATTATACTTCATGA 1335 0.4749 MKRSSRTSSSSCSSPSSSSSSSVEFQNPDQAEEGGRGNHKRPRRSNNNNNQRSNLMKSPKQNAGSSSSPGRRSSVYRGVTRHRWTGRFEAHLWDKSSWNSVQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGRDSTLNFPIETYTKELEEMEKVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAATAYDLAAIQYRGANAVTNFDLSRYIDKITTNTTKKDESQEETVITVTSQEEADPNPSSSSSCFESENLTLNNQNQQPQEHEDQEIKPENPRIKPTLMPTPSEESSPIAHPKSLAADEQELPWIFMEDDGFSQFQVPDLPDGDLLNVYDESGRRFEDDIGFLFRPEPEEGDFNLDAILNSPSYGDLVMADSTTTTVVVGDDDCGPRKLLCSATSPSSSPNSSISSSDYTS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1650 444 FunFam AP2-like ethylene-responsive transcription factor 74 143 - -
Dere08g1650 444 CDD AP2 176 237 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 SUPERFAMILY DNA-binding domain 176 237 IPR016177 GO:0003677
Dere08g1650 444 ProSiteProfiles AP2/ERF domain profile. 75 141 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 PRINTS Ethylene responsive element binding protein signature 217 237 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 Gene3D AP2/ERF domain 176 237 IPR036955 GO:0003700|GO:0006355
Dere08g1650 444 Gene3D AP2/ERF domain 75 143 IPR036955 GO:0003700|GO:0006355
Dere08g1650 444 SUPERFAMILY DNA-binding domain 74 143 IPR016177 GO:0003677
Dere08g1650 444 ProSiteProfiles AP2/ERF domain profile. 177 235 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 Pfam AP2 domain 74 133 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 Pfam AP2 domain 176 227 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 MobiDBLite consensus disorder prediction 47 74 - -
Dere08g1650 444 MobiDBLite consensus disorder prediction 257 293 - -
Dere08g1650 444 SMART rav1_2 177 241 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 SMART rav1_2 75 147 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 295 - -
Dere08g1650 444 MobiDBLite consensus disorder prediction 248 326 - -
Dere08g1650 444 MobiDBLite consensus disorder prediction 1 77 - -
Dere08g1650 444 FunFam AP2-like ethylene-responsive transcription factor 176 237 - -
Dere08g1650 444 MobiDBLite consensus disorder prediction 1 28 - -
Dere08g1650 444 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Dere08g1650 444 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1650 Dere-ChrDere08 22150670 22160284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1650 58 303 AP2-EREBP Transcription Factor Family AT5G57390 56.126 1.71e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere08g1650 AP2 3.1e-12 CL0081