Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1642 ATGGGAATGGGAACCAGAAAGCTCTCAGATGAATATGAAGTTTCAGAGATCTTAGGAAGAGGAGGATTCTCTGTTGTGAGAAAAGGCATAAAAAAATCTAGCAGTGAGAAAAAGCAGGTAGCCATAAAAACACTGAGAAGGTTAGGAACCTCTAATCCTTCGCCAGGATTTCCAAGAATCCAGAGAGGCGAAAAGAGTGTAGCAACCATGGGGTTCCCAACTTGGAGACAAGTTTCAATCTCTGATGCCTTACTCACCAATGAGATCTTGGTCATGAGAAAGATAGTAGAGAACGTTTCACCTCATCCAAATGTGATTGACCTCTATGATGTTTATGAGGACTCAAACGGGGTTCATCTTGTCCTTGAGCTTTGTTCCGGAGGCGAGCTGTTTGACCGGATTGTGGCTCAAGAGAAGTACAGAGAGGTGGAAGCTGCAGCTGTAATTCATCAGATTGCAAAAGGTCTGGAGGCTATTCACAGAGCTAATATTGTGCACAGGGACTTGAAGCCTGAGAATTGCTTATTCCAGGACAGTAGGAAGGACTCTCCTCTGAAGATCATGGACTTTGGGTTGAGTTCTGTGGAGGAGTTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTTGTAAGAGTGACATGTGGTCTGTGGGAGTAATTCTGTATATCTTGCTCTCTGGGTATCCGCCTTTCATTGCTCAGTCTAATCGCCAAAAGCAACAAATGATCATGACTGGGAGTTTCAGTTTTTATGAAAAGACTTGGAAAGGCATTTCCTCCTCAGCAAAGCAGTTGATTTCAAGTCTCCTAGAAGTTGATCCTGATAGGAGACCTAGTGCTCAAGAGCTTCTCAGTCATCCATGGGTCAGAGGAGAAATAGCTAAAGATGATCAAATGGACCCTGAGATTGTTGCAAGATTGCAAAATTTTAATGCTCGTCGGAAACTCCGTGCTGCTGCAATTGCTAGTGTATGGAGCAGCACAGTCTTCCTGAGAATTAAAAATTTGAAATCCTTGTTGGGATCCTATGATCTTACAGAAGAGGAAATCGAAAATCTCAAAATACACTTCAAGAAAATATGTGCAGACAGAGACAACGCCACTCTCTCTGAATTTGAGGACGTACTAAAAGCAATGAATATGTCATCGCTTATCCCCCTGGCACCACGCATATTTGACCTATTTGACAACAATCGTGATGGAACAGTTGACATGCGAGAGATACTGTGTGGGTTTTCCAGCCTCAAGAATTCAAAGGGTGATGATGCTCTCCGTCTGTGCTTCCAGATGTATGATACAGATCGATCCGGGTGCATCACTAAGGAAGAAGTAGCATCCATGCTCAGAGCTTTGCCAGATGACTGCCTACCAGCTGATATCACTGAACCAGGCAAATTGGACGAGATATTTGACCGGATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGACGTAGTCCTTTCCTCTCTTCGGCCATCACAGTTTTCTGAGTTTATCATTATGAGATCCAAAAAAATGCAAAACGATTCAGAGGAAACTAGCACGGAAAGTCCAAAAACCCTTGAAATTGAGGAAGTGCTTTCAGCAAAGGGGGAGGGGAGGGAATTCGATGAATCTGAAGCAGCTGGCCGCTATGGGGGCGTTAAGCGTTCATCCATTGATTATATTTTTACCATCTAA 1764 0.4342 MGMGTRKLSDEYEVSEILGRGGFSVVRKGIKKSSSEKKQVAIKTLRRLGTSNPSPGFPRIQRGEKSVATMGFPTWRQVSISDALLTNEILVMRKIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQEKYREVEAAAVIHQIAKGLEAIHRANIVHRDLKPENCLFQDSRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITCKSDMWSVGVILYILLSGYPPFIAQSNRQKQQMIMTGSFSFYEKTWKGISSSAKQLISSLLEVDPDRRPSAQELLSHPWVRGEIAKDDQMDPEIVARLQNFNARRKLRAAAIASVWSSTVFLRIKNLKSLLGSYDLTEEEIENLKIHFKKICADRDNATLSEFEDVLKAMNMSSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDVVLSSLRPSQFSEFIIMRSKKMQNDSEETSTESPKTLEIEEVLSAKGEGREFDESEAAGRYGGVKRSSIDYIFTI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1642 587 PRINTS Recoverin family signature 405 426 - -
Dere08g1642 587 PRINTS Recoverin family signature 429 448 - -
Dere08g1642 587 PRINTS Recoverin family signature 359 378 - -
Dere08g1642 587 PRINTS Recoverin family signature 495 515 - -
Dere08g1642 587 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 346 515 - -
Dere08g1642 587 Pfam EF-hand domain pair 436 505 IPR002048 GO:0005509
Dere08g1642 587 Gene3D - 347 514 - -
Dere08g1642 587 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 126 - -
Dere08g1642 587 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Dere08g1642 587 SUPERFAMILY EF-hand 348 511 IPR011992 -
Dere08g1642 587 SMART serkin_6 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1642 587 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Dere08g1642 587 CDD EFh 438 505 IPR002048 GO:0005509
Dere08g1642 587 CDD STKc_CAMK 12 302 - -
Dere08g1642 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Dere08g1642 587 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Dere08g1642 587 SMART efh_1 437 465 IPR002048 GO:0005509
Dere08g1642 587 SMART efh_1 479 507 IPR002048 GO:0005509
Dere08g1642 587 SMART efh_1 401 429 IPR002048 GO:0005509
Dere08g1642 587 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Dere08g1642 587 SUPERFAMILY Protein kinase-like (PK-like) 7 323 IPR011009 -
Dere08g1642 587 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Dere08g1642 587 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 130 320 - -
Dere08g1642 587 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Dere08g1642 587 Gene3D Phosphorylase Kinase; domain 1 61 130 - -
Dere08g1642 587 Pfam EF hand 406 421 IPR002048 GO:0005509
Dere08g1642 587 Pfam Protein kinase domain 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1642 587 Gene3D Phosphorylase Kinase; domain 1 7 51 - -
Dere08g1642 587 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Dere08g1642 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 484 - -
Dere08g1642 587 Gene3D Transferase(Phosphotransferase) domain 1 131 346 - -
Dere08g1642 587 ProSiteProfiles Protein kinase domain profile. 12 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1642 Dere-ChrDere08 21960161 21966756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1642 5 506 EF-hand Containing Proteins AT5G23580 32.738 1.04e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Dere08g1642 Pkinase 2.2e-59 CL0016