Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1639 ATGTCTTCTTCAAGTCCTAACGAGGGATCTGGTGAGTTTGAATCACTTCCACCTCCACTAGCTACCATCCCTCCACATGCTGAGAATCATTGGTTGCCATGTTTTATGAAGATGGACACCCTGTGGAAGCCTAGGGCATTGGGAGAAGAGCTTGGAAGGAATGGAAGCCCGGACATTCCCAAGGGAAGTGATAAGAAAAGACGGAGGCTTCAATCTCAGTCCAAGACTTTCAAGGTAGAGATCAGTTATGCTACCAAAATCCCTATTCAAGCAATTGTGGATGCATTGCGTGACCTTGGAGGTGGTGTTCTAGGTTCCTGTGGTTTTCATTCAAGCTTTCAAGCCACTCAAGGGGGTTTATCCCTAAACCTGGACGTGTCAATAACAATGCTTCTGAAACCTGGCCCAGTGGTGGACTTCCTTTGCTTGAATCACAATGTTAACCATCTTAGGTTAATTGATTGGACCGTGGTAACATTGCTATATCCTATTACTATCTGATTTTTATTAAGACAAGGAAGGGATGCAAATGGTGAAGTGCAATCCATTGAAGTAAGAGTTCGTGATTATTTTGAACACCATAAGCACATAAGATTGCGGTATTCAGCTGATTTGCCATGCATCAACGTCGGCAAACCAAAGCGTCCGTCTTTTTTTCCAGTGGAGCTCTGCACCTTGGTCCCGTTGCAACGTTACACCAAGGCACTTACCAATTTGCAGAGAGCTGCGCTTGTGGAGGAGTCAAGGCAAAAGCCCCATGAACGAAAGGCAGCTTTGGCTGAATCACTAAGAAACAGCAGATATGGTAATGAGCCTATGCTTTGCTCTTCTGGAATCACCATTGATTCTGAGTTTACTCGAGTTGACGGTCGTGTTCTGCCAGCTCCAAAGAACTTGAGTGATCCATTTGGCGTTTTTGAAGAGGATCAACAAATGAGACGTGAGCCAGCCTCTGTGAGGGTCCAAAAACTGTATGCAACTGTGAAGCAAAAGTTGCCTCAACGCCCCCAACTTCTGTTATGCATTCTTCCAGAGAGGAAGAATTCTGACATTTATGGTCCTTGGAAAAGAAGAAATCTTGCAGTGGAAGGAGTTGTCACACAGTGCATTGCCCCAACAAAGATGAATGATCAGTACTTTACTAATGTTCTATTGAAAATTAATGCCAAGCTTCGTGGGAGGAATTTCTATTTGGCAATAGAACATTCACCTTCCATACCTTTAGTTTCTAAGGCACCTACCTTAATTCTTGGAATGGATGTCTCACATGGCTGTCCTGGTCGATCAGATGTGCCATCTATTGCTGCAGTTGTCAGCTCCAGGTATTGGCCTTCAATTTCATGTTATAGAGCATCAGTTCGTACTCAGTCACCAAAAGTTGAGATGATTGCTAGTCTACTCAAGCCTGTTTCTGATGCCAATGATGGTGTTATTATCAGAGAGCTGCTTGTGGACTTCACTGCAACTTCAGGTTCAAGAAAGCCAGACCATATTATCATTTTCAGGAATGGAGTAACTGAATCACAGTTCAATCAAGTCTTGAACTTTGAGTTTGATCAAATCATTCAGGCATGCAAACATCTGCAAGAAAATTGGAACCCAAAGTTCACTGTAATTGTTGCCCAAAAGAATCATCATACTAGGTTCTTCCAGACCAATGCTCAAGAAAATGTCCCACCTGAATCTGTCACCCAAAAGAACAATAACTTCTATATGTGTGCTCATGCTGGGATGATTGGGACAACTCGGCCTACTCATTACCATGTTTTACATGACGAGATTGGGTTCTCAGCTGATGGTTTGCAAGAACTTGTGCATTCTCTATCCTATGTGCATCAGAGGAGCACAACGGCTGTATCAGCAGTTGCTCCAATTAGCTATGCTCACTTGGCAGCAGCCCAAGTGGCACAGTTTATCAAGTTTGATGAAGTTTCAGGGTCTTCTTCTAGCCATGGTGGACCTCACGTCCGAGAGCTACCTCGTCTTCATAGAAATGTCCGCAACTCCATGTTTGTTAGAAGTTTTTCTTCATTTTGTTTGCACTACATTCGGATTGTATAA 2061 0.4343 MSSSSPNEGSGEFESLPPPLATIPPHAENHWLPCFMKMDTLWKPRALGEELGRNGSPDIPKGSDKKRRRLQSQSKTFKVEISYATKIPIQAIVDALRDLGGGVLGSCGFHSSFQATQGGLSLNLDVSITMLLKPGPVVDFLCLNHNVNHLRLIDWTVVTLLYPITIXFLLRQGRDANGEVQSIEVRVRDYFEHHKHIRLRYSADLPCINVGKPKRPSFFPVELCTLVPLQRYTKALTNLQRAALVEESRQKPHERKAALAESLRNSRYGNEPMLCSSGITIDSEFTRVDGRVLPAPKNLSDPFGVFEEDQQMRREPASVRVQKLYATVKQKLPQRPQLLLCILPERKNSDIYGPWKRRNLAVEGVVTQCIAPTKMNDQYFTNVLLKINAKLRGRNFYLAIEHSPSIPLVSKAPTLILGMDVSHGCPGRSDVPSIAAVVSSRYWPSISCYRASVRTQSPKVEMIASLLKPVSDANDGVIIRELLVDFTATSGSRKPDHIIIFRNGVTESQFNQVLNFEFDQIIQACKHLQENWNPKFTVIVAQKNHHTRFFQTNAQENVPPESVTQKNNNFYMCAHAGMIGTTRPTHYHVLHDEIGFSADGLQELVHSLSYVHQRSTTAVSAVAPISYAHLAAAQVAQFIKFDEVSGSSSSHGGPHVRELPRLHRNVRNSMFVRSFSSFCLHYIRIV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1639 686 Pfam PAZ domain 185 244 IPR003100 GO:0005515
Dere08g1639 686 SUPERFAMILY Ribonuclease H-like 322 638 IPR012337 -
Dere08g1639 686 CDD PAZ_argonaute_like 184 227 - -
Dere08g1639 686 Gene3D - 405 672 IPR036397 GO:0003676
Dere08g1639 686 Pfam Argonaute linker 2 domain 254 297 IPR032472 -
Dere08g1639 686 SMART DUF1785_2 69 134 IPR014811 -
Dere08g1639 686 SMART Piwi_a_2 338 640 IPR003165 GO:0003676
Dere08g1639 686 MobiDBLite consensus disorder prediction 1 24 - -
Dere08g1639 686 Pfam Argonaute linker 1 domain 97 130 IPR014811 -
Dere08g1639 686 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 311 642 - -
Dere08g1639 686 Gene3D - 274 403 - -
Dere08g1639 686 Pfam Piwi domain 339 640 IPR003165 GO:0003676
Dere08g1639 686 Gene3D paz domain 165 234 - -
Dere08g1639 686 MobiDBLite consensus disorder prediction 47 70 - -
Dere08g1639 686 FunFam Protein argonaute 3 406 673 - -
Dere08g1639 686 ProSiteProfiles Piwi domain profile. 338 640 IPR003165 GO:0003676
Dere08g1639 686 ProSiteProfiles PAZ domain profile. 168 228 IPR003100 GO:0005515
Dere08g1639 686 SUPERFAMILY PAZ domain 129 268 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1639 Dere-ChrDere08 21919271 21930648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1639 326 671 Eukaryotic Initiation Factors Gene Family AT1G48410 42.228 2.79e-74 257