Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1638 ATGGGTTCTTCAACTCTTAGTGAGAAATCCGGTGAGTTTAAATCACTTCCACCTATACCAGCCACCATCCCTCCACATGTTCCTAGTAAAGCAGAACCAGGAAAAACTTATGAGCCTCAGAAGAAAACATCAAATTCAAAACTATTGCCTATGGCCAGGCGTGGTGTTGGATCAAAGGGCCAAAAGATACAGCTATTGAGCAACCATTTTAGAGTTGGCGTGGGCAAGAAAGATGGCTACTTCTATCATTATAGTGTATTTCCTGCCCTCTTTATCCATGTCTCATTGGACATGGTTGCCCTGTTTTATGAAGATGGACGCCCTGTCGAAGCCAAGGGCATTGGGAGAAGAGTCATAGACCAAGTTTACGAGACATATAGTTCTGAACTAGAAAGCAAGGACTTTGCATTCGACGGAGAGAAGAGCTTATTCACTCATGGTTCACTCCCACGTAACAAGCTTGAATTTACTGTCGTGCTGGATGATATTTCATCAAACAAGCTTGGAAGGAATGGAAGGCCGGACAGCCCCGAGGGAGGTGACAAGAAAAGAATGAGGCGTCAATCTCAGTCCAAGACTTTCCAGGTAGAGATCAGTTATGCTGCCAAAATTCCTATTCAAGCAATTGTAGTTGCATTACGTGGTCAGGAATCTGAGCAATTCCAAGAAGCACTGAGGGTTCTGGACATTATACTAAGGCAGCATGCAGCAAAGCAGGGCTGTCTTCTTGTTCGCCAATCTTTCTTCCACGATGGTCCAAGAAATTACACAGACATTGGAGGTGGTGTTCAAGGTTGCCGTGGCTTTCATTCAAGCTTCCGAATCACTCAAGGGGGTTTGTCCCTAAACATGGATGTGTCAACAACAATGCTTCTACAACCTGGCCCAGTGTTGGACTTCCTCTGCATGAATCAAAATGTCAACCATCCTAGCTTAATTGATTGGACCAAGGCAAAAAGGATGTTGAAAAATCTGAGAATCAAGGCTAACAAGATTGAGTACAAAATCACAGGATTGAGTGAAAGACCCTGCAGAGATCAGACATTTTCATTAAGACAAGGAAGGGATGCAAACGGTGAAGTGCAATCAATTGAATTAACAGTTCGTGATTATTTTGAACAACATAAGCATATAAGATTGCAGTATTCAGCTGATTTGCCATGCATCAATGTTGGCAAACCGAATCGCCCATCTTATTTCCCAGTGGAGCTCTGCACCTTGGTCCCATTGCAACGTTACACCAAGGCACTTACCAATTTGCAGAGAGCTGCGCTTGTGGAGAAATCAAGGCAAAAGCCCCATGAACGAAAGGCAGCTTTGGCTGATTCACTAAGAAACAGCAGATATGGTAATGAGCCTATGCTACGCTCTTCTGGAATCACCATTGATTCCGAGTTTACTCAAGTTGACGGTCGTGTTCTGCCTGCCCCTAAGCTTCGAGTAGGAAATGGGGAGGACTTCTTTCCCCGAAATGGGAGGTGGAATTTCAACAATAAGCGACTAGTTCAACCTGTGGAGATTAAGCGTTGGGCTGTTGTAAACTTCTCAGCTCGTTGTGATATTCGTTACCTCATCAATGGACTGAAGAAATGTGCAGATATGAAGGGGATTATCTTGAGTGATCCATTTCGCGTGTTTGAAGAGGATCAACGAATGAGACGTGAGCCAGCCCCCGTGAGGGTCGAGAGATTGTATGCAACTGTGAAATCAAATTTGCCTGGATATCCCCAACTTCTGTTATGCATTCTTCCAGAGAGGAAGAATTCTGACATTTATGGTCCTTGGAAAAAAAGAAACCTTGCTGACGAAGGAGTTGTCACACAATGTATTGCCCCAACAAAAATGAATGATCAGTACTTTACTAATGTTCTATTGAAAATTAATGCCAAGCTTGGTGGGATGAATTCCTTTTTGGCAATAGAGCATTCACCTTCCATACCTCTAGTTTCTAAGGTACCAACCTTAATTCTTGGTATGGATGTCTCACATGGCTCTCCTGGTCGATCAGATGTGCCTTCTATTGCTGCGGTTGTCAGCTCCAGGTGTTGGCCTTTAGTTTCACGTTATAGAGCATCAGTTCGTACTCAGTCACCAAAAGTTGAGATGATCGCTAATCTATTTATGCCTGTTTCTGATACCAAGGATGATGGTATTATCAGAGAACTGCTTGTGGACTTCACTGCAACTTCAGGATCAAGGAAGCCTGATCATATAATCATTTTCAGAGATGGAGTAAGTGAATCACAGTTCAATCAAGTCTTGAACATTGAGTTACATCAAATCATTCAGGCATGCAAACATCTTCAAGAAAATTGGAACCCAAAGTTCACTGTAATTGTTGCCCAAAAGAATCATCATACTAAGTTCTTCCAGGCCAATGCTCAAGAAAATGTTCCACCTGGAACTGTCATTGATAATAAAATCTGTCACCCAATGAACAATGACTTCTATATGTGTGCTCATGCTGGGATGATTGGCACAACTCGGCCTACTCATTACCATGTTTTACATGATGAGATTGGGTTCTCAGCTGATGGTTTGCAAGAACTTGTGCATTCTCTATCCTATGTGTATCAGAAGAGCACAACAGCTATATCAGTAGTTGCTCCAATTAGCTATGCTCACCTGGCAGCAGCCCAAGTGGCACAATTTGTCAAGTTTGACGAAGTTTCAGAGTCTTCTTCTTGCCATGGTGGACTTTCATCTACTGGTGCACCTCACGTCCAAGAGCTACCTCGTCTTCACAAAAATGTCTGCAACTCCATGTTCTTCTGTTAG 2778 0.4309 MGSSTLSEKSGEFKSLPPIPATIPPHVPSKAEPGKTYEPQKKTSNSKLLPMARRGVGSKGQKIQLLSNHFRVGVGKKDGYFYHYSVFPALFIHVSLDMVALFYEDGRPVEAKGIGRRVIDQVYETYSSELESKDFAFDGEKSLFTHGSLPRNKLEFTVVLDDISSNKLGRNGRPDSPEGGDKKRMRRQSQSKTFQVEISYAAKIPIQAIVVALRGQESEQFQEALRVLDIILRQHAAKQGCLLVRQSFFHDGPRNYTDIGGGVQGCRGFHSSFRITQGGLSLNMDVSTTMLLQPGPVLDFLCMNQNVNHPSLIDWTKAKRMLKNLRIKANKIEYKITGLSERPCRDQTFSLRQGRDANGEVQSIELTVRDYFEQHKHIRLQYSADLPCINVGKPNRPSYFPVELCTLVPLQRYTKALTNLQRAALVEKSRQKPHERKAALADSLRNSRYGNEPMLRSSGITIDSEFTQVDGRVLPAPKLRVGNGEDFFPRNGRWNFNNKRLVQPVEIKRWAVVNFSARCDIRYLINGLKKCADMKGIILSDPFRVFEEDQRMRREPAPVRVERLYATVKSNLPGYPQLLLCILPERKNSDIYGPWKKRNLADEGVVTQCIAPTKMNDQYFTNVLLKINAKLGGMNSFLAIEHSPSIPLVSKVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPLVSRYRASVRTQSPKVEMIANLFMPVSDTKDDGIIRELLVDFTATSGSRKPDHIIIFRDGVSESQFNQVLNIELHQIIQACKHLQENWNPKFTVIVAQKNHHTKFFQANAQENVPPGTVIDNKICHPMNNDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADGLQELVHSLSYVYQKSTTAISVVAPISYAHLAAAQVAQFVKFDEVSESSSCHGGLSSTGAPHVQELPRLHKNVCNSMFFC 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1638 925 Pfam Piwi domain 579 886 IPR003165 GO:0003676
Dere08g1638 925 Coils Coil 322 342 - -
Dere08g1638 925 SMART DUF1785_2 242 294 IPR014811 -
Dere08g1638 925 MobiDBLite consensus disorder prediction 174 188 - -
Dere08g1638 925 CDD PAZ_argonaute_like 294 408 - -
Dere08g1638 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 44 888 - -
Dere08g1638 925 Pfam PAZ domain 298 425 IPR003100 GO:0005515
Dere08g1638 925 Pfam Argonaute linker 1 domain 244 290 IPR014811 -
Dere08g1638 925 Pfam Argonaute linker 2 domain 435 480 IPR032472 -
Dere08g1638 925 SUPERFAMILY Ribonuclease H-like 562 884 IPR012337 -
Dere08g1638 925 Pfam N-terminal domain of argonaute 61 232 IPR032474 -
Dere08g1638 925 CDD Piwi_ago-like 453 880 IPR045246 -
Dere08g1638 925 Gene3D - 473 639 - -
Dere08g1638 925 SMART Piwi_a_2 578 886 IPR003165 GO:0003676
Dere08g1638 925 ProSiteProfiles PAZ domain profile. 334 409 IPR003100 GO:0005515
Dere08g1638 925 MobiDBLite consensus disorder prediction 1 48 - -
Dere08g1638 925 ProSiteProfiles Piwi domain profile. 578 886 IPR003165 GO:0003676
Dere08g1638 925 FunFam Protein argonaute 7 289 413 - -
Dere08g1638 925 MobiDBLite consensus disorder prediction 167 188 - -
Dere08g1638 925 FunFam Protein argonaute 3 646 925 - -
Dere08g1638 925 Gene3D paz domain 288 413 - -
Dere08g1638 925 SUPERFAMILY PAZ domain 289 449 IPR036085 GO:0005515
Dere08g1638 925 Gene3D - 645 925 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1638 Dere-ChrDere08 21892323 21899885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1638 30 925 Eukaryotic Initiation Factors Gene Family AT1G48410 34.219 1.01e-161 499