Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1633 ATGTCACCCTCTTCCCTTTCCCTATTTCCCTTCGTTCTCTCCCTCTTCCTCCTTCTACCACTACTCCTAGCTCAACCTCCTCTTCCTCCTCCTCCTCCATCTTCTCCTTCTGCAGCCTGCAAGTTCACATTGTACCCAAAACTATGTCGTTCCATACTCTCCGTGATCGGCTCCTCGCCGTCCGACCCCTACGGCTTCGGCAAGTTCTCCATCAAGCAAAGCCTCAAGCAAGCCAAGAGACTCGCCAAGGTGTTTGACGACTTCCTCAACCGCCACCGCTCCTCCTCGCCCGAGCTCGCCGCCCTCGACGACTGCCGGGACCTCAACCAGCTCAACGTCGACTACCTGGAGTCCGTCGCCGCCGAGCTCCAAGCCGACACCTCCGCCTCCGCGGCCAGCGCCGAGCTGACGGAGAAGATAGAGAGCTATCTGAGCGCCGTCGCCACCAACCACTACACCTGCTACGACGGCCTGGTGGCGAGCAAGAGCAACATTGCGAAGGCCATGGCGGTGCCGTTGAGGAATGTGACGCAGCTGTACAGCGTGTCGCTAGGGTTGGTGAGTGAAGCTCTGAATCAGAATGCGAAGAAGATGAAGACGAGCAAGCATGGGCTTCCTACTCAGTCTTACAGAGTCAGGCAGCCACTTGAGAAGCTCATTCAGGTTCTTCGTGAAAAGTATAGTTGCAAGAAAGCATCTAATTGTACTACCAGAAGTGAAAGGATTCTTAAAGAGAGTGAAAGCAAAGGGATTCTATTGAACAACTATGCAATTGTGAGCCATTATGGGACTGACAACTTCACTTCCATTGGAGATGCCATTGCTGCTGCGCCCAATAACTTGAAACCAGAAGATGGCTATTTCCTTGTCTATGTCAGAGAAGGATACTATGAAGAATATGTGGTTGTTGCAAAACATAAGAAGAACATCTTGCTCATTGGAGATGGTATCAACCAGACTATCATCACAGGGAATCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCCGGAGAAAGATTTATAGCAGTGGATGTCACATTCAGGAACACAGCAGGCCCTGAGAAGCACCAAGCGGTGGCAGTGAGGAACAACGCTGACCTTTCCACATTTTACCGGTGCAGCTTTGAAGGGTACCAAGACACCCTCTATGCTCACTCCCTTAGGCAATTCTACAGAGAATGTGACATCTATGGCACTGTAGACTTCATATTTGGTAATGCAGCTGTGGTATTCCAGGACTGCAAGATCCATGCCAGAAAACCACTTCCATTTCAGAAGAATGCCATCACAGCACAAGGCAGAACTGACCCAAATCAAAACACAGGAATCTCAATCCAGAATTGCACTATTGAAGCAGCACAGGACTTGGCTTCAGATTTGAACTCTACTACCTTGACCTACTTAGGAAGGCCATGGAAGGAATATTCTAGAACTGTGTACATGCAGTCTTATATTGGGGATCTGATTGAACCTTCTGGTTGGTTAGAGTGGAATGGGACTGTAGGGTTGGACACTTTATTCTTTGGTGAGTTCAAGAACTATGGACCTGGTGCTGATACTAGCAGTAGGGTTCAATGGCCTGGCTATAATCTGTTAAATGCTACTCAGGCTATGAACTTTACTGTCCTTAATTTTACATTGGGAGACACTTGGCTTCCTGACACTGATATACCCTACACTGGAGGATTACTCGATAATTAG 1722 0.4855 MSPSSLSLFPFVLSLFLLLPLLLAQPPLPPPPPSSPSAACKFTLYPKLCRSILSVIGSSPSDPYGFGKFSIKQSLKQAKRLAKVFDDFLNRHRSSSPELAALDDCRDLNQLNVDYLESVAAELQADTSASAASAELTEKIESYLSAVATNHYTCYDGLVASKSNIAKAMAVPLRNVTQLYSVSLGLVSEALNQNAKKMKTSKHGLPTQSYRVRQPLEKLIQVLREKYSCKKASNCTTRSERILKESESKGILLNNYAIVSHYGTDNFTSIGDAIAAAPNNLKPEDGYFLVYVREGYYEEYVVVAKHKKNILLIGDGINQTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQDCKIHARKPLPFQKNAITAQGRTDPNQNTGISIQNCTIEAAQDLASDLNSTTLTYLGRPWKEYSRTVYMQSYIGDLIEPSGWLEWNGTVGLDTLFFGEFKNYGPGADTSSRVQWPGYNLLNATQAMNFTVLNFTLGDTWLPDTDIPYTGGLLDN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1633 573 CDD PMEI-like_3 40 189 - -
Dere08g1633 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Dere08g1633 573 NCBIfam pectinesterase inhibitor domain 10 187 IPR006501 GO:0004857
Dere08g1633 573 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Dere08g1633 573 Gene3D - 255 572 IPR012334 -
Dere08g1633 573 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Dere08g1633 573 PANTHER PECTINESTERASE 22 562 - -
Dere08g1633 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 188 IPR035513 -
Dere08g1633 573 SUPERFAMILY Pectin lyase-like 254 569 IPR011050 -
Dere08g1633 573 SMART PMEI_2 31 186 IPR006501 GO:0004857
Dere08g1633 573 FunFam Pectinesterase 252 570 - -
Dere08g1633 573 Pfam Plant invertase/pectin methylesterase inhibitor 37 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1633 Dere-ChrDere08 21753408 21758019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1633 39 571 Carbohydrate Esterase AT3G10720 62.662 0.0 705