Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1618 ATGGAAAGAGGGTTAGGCCACAACTCTGTTCCGTCTTCAAGTTCCTTTGACAAGGCAACAATTTTGGATGTTAAACCTCTGCGATTTTTGCTACCTGTGTTCCCAGTGTCATCTCAAGCTCCTTCCTCTGGCCAGTGTCCTTCTGGGTTCTCTCCTTTTTTCCCCTTTGGCGGACCTCAAGAATCTCAAGCATGGACTGATCTCAATCAGCAAACTCCTCCCTCTGGGGTGACACCAGGTGGTCCCATGCCAGCTCCAATACGTTCATTTAGAAGCCCTTTAGACTCTACTTCATCGAAACATGGAGCACCACATGGGAGTAGCTTCAAATCATCCAAAAAGAAGACCAAGAAAAGCGAAGAGTCACAAATGGATTTAAGTTCTGTAGTTGGTATTAGCCCAGCTCAACGTGAAGATGGTAACCGCGAACTGGTTAATCTTGTACTCATGACGTATGATGCACTTCGAAGAAGGCTCTGCCAACTTGAAGATGCCAAGGAATTAATTACAGGGTTAACCAAGCGTGCAGATTTAAAAGCTGGCAATGCATTGATGACCAAAGGCATTCGAACAAACATGAAGAGGAGAATAGGTGTAGTTCCTGGGGTCGAGATTGGGGACATTTTCTTTTTCAGAATGGAACTATGTGTTGTAGGGTTACATGCTCAATCCATGGGCGGGATTGACTACATGACTATTAAGGGTGAGTTTGAGGAAGAACCTGTGGCTTTAAGCATTGTTTCATCGGGAGAATATGATGACAATGCAGAGGATGATGATATTTTAATTTATAGTGGTCAGAGTGGGAACTTTGGCAAGAAAGAGAAGCTGGTGGCTGATCAGAAGCTTCAAAGGGGTAATCTTGCCTTGGAGAGAAGTTCACGACGACGCAATGAAGTAAGAGTCATCCGAGGCATGAGAGATGCTGTGAACCCAAATGCAAAAATCTATGTTTATGATGGTATGTACAAAATTCAAGATTCATGGATAGAAAAGGGGAAATCTGGCAGTGGTGTATTTAAGTACAAGTTCGTGAGAATGCCTGGACAGCTTAGTGCCTTTGCTGTTTGGAAATCAGTCCAGAAGTGGAAGACGGGCTTTTATTCAAGAACTGGACTCATTCTTTCAGACCTCTCTGCAGGAGCAGAGAGCATTCCTGTATCACTTGTCAATGATTATGATCATGAAAGGGCACCTGCTGGTTTCACTTATTTCCATTCCCTTAGATATCCAAAATCATTCAGCTTAATGCAGCCTTCTTATGGCTGCAACTGTACTAAAGCATGTGTACCTGGTGATTTGAACTGCTCTTGTATTCGAAAAAATGAAGGTGATTTTCCTTATACTGGAAATGGCATTCTAGTGAGTCGGAAGCTATTAATTCATGAATGTGGCCCCACCTGTCACTGTTTTCCTAACTGCAAAAATCGAGCATCTCAGACTGGCGTAAAGCACAACATGGAAGTATTCAAAACAAGGGATAGAGGATGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTACTTTTATCTGTGAGTATGCTGGAGAAGTTATTGATAACAGAAAGTTAAATCAGAATGGGGAGGTAGCAGTTGATGATGATTATGCTTTTGCTACAAACCGTATTTATCATCCATTCAAGTGGAATTACGAGCCTAGGTTACTAGAAGAAGTGAGTTCAAATGACTCTAGTGAGGATTATGATATTCCATCTCCTCTAATTATAAGTGCTAAAAATTTTGGAAATGTAGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTTGTATATGAAGAAAACAATCACTGCTTCCTTCGTATTGCATTTTTCTCTCTTAGACACATTCCCCCATTGACAGAGTTGACATATGATTATGGGATTACCCGTTCTAATCATACTGAGGGTAGCAGCATACCCAAAGGAAGAAAAAAATGCTTATGTGGATCATCAAACTGCCGTGGTTCTTTTGGTTGA 1992 0.4192 MERGLGHNSVPSSSSFDKATILDVKPLRFLLPVFPVSSQAPSSGQCPSGFSPFFPFGGPQESQAWTDLNQQTPPSGVTPGGPMPAPIRSFRSPLDSTSSKHGAPHGSSFKSSKKKTKKSEESQMDLSSVVGISPAQREDGNRELVNLVLMTYDALRRRLCQLEDAKELITGLTKRADLKAGNALMTKGIRTNMKRRIGVVPGVEIGDIFFFRMELCVVGLHAQSMGGIDYMTIKGEFEEEPVALSIVSSGEYDDNAEDDDILIYSGQSGNFGKKEKLVADQKLQRGNLALERSSRRRNEVRVIRGMRDAVNPNAKIYVYDGMYKIQDSWIEKGKSGSGVFKYKFVRMPGQLSAFAVWKSVQKWKTGFYSRTGLILSDLSAGAESIPVSLVNDYDHERAPAGFTYFHSLRYPKSFSLMQPSYGCNCTKACVPGDLNCSCIRKNEGDFPYTGNGILVSRKLLIHECGPTCHCFPNCKNRASQTGVKHNMEVFKTRDRGWGLRSLDPIRAGTFICEYAGEVIDNRKLNQNGEVAVDDDYAFATNRIYHPFKWNYEPRLLEEVSSNDSSEDYDIPSPLIISAKNFGNVARFMNHSCSPNVFWQPVVYEENNHCFLRIAFFSLRHIPPLTELTYDYGITRSNHTEGSSIPKGRKKCLCGSSNCRGSFG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1618 663 Pfam Pre-SET motif 379 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere08g1618 663 MobiDBLite consensus disorder prediction 91 106 - -
Dere08g1618 663 Gene3D SET domain 367 662 IPR046341 -
Dere08g1618 663 ProSiteProfiles Post-SET domain profile. 647 663 IPR003616 -
Dere08g1618 663 MobiDBLite consensus disorder prediction 61 133 - -
Dere08g1618 663 ProSiteProfiles Pre-SET domain profile. 421 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere08g1618 663 MobiDBLite consensus disorder prediction 62 76 - -
Dere08g1618 663 SMART G9a_1 193 350 IPR003105 -
Dere08g1618 663 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 663 IPR025794 GO:0016571
Dere08g1618 663 SMART preset_2 375 469 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere08g1618 663 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 97 657 - -
Dere08g1618 663 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 181 365 - -
Dere08g1618 663 ProSiteProfiles SET domain profile. 485 632 IPR001214 GO:0005515
Dere08g1618 663 SMART set_7 485 638 IPR001214 GO:0005515
Dere08g1618 663 Pfam SET domain 496 632 IPR001214 GO:0005515
Dere08g1618 663 Pfam SAD/SRA domain 197 350 IPR003105 -
Dere08g1618 663 SUPERFAMILY SET domain 384 660 IPR046341 -
Dere08g1618 663 Gene3D - 180 365 IPR036987 -
Dere08g1618 663 ProSiteProfiles YDG domain profile. 198 346 IPR003105 -
Dere08g1618 663 SUPERFAMILY PUA domain-like 180 368 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1618 Dere-ChrDere08 21534577 21536568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1618 6 663 Su(var)3-9 homologs AT1G73100 53.734 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere08g1618 SAD_SRA 8.1e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1618 08 21534577 21536568 Dere07g1470 07 19461410 19463383 CCT