LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1613	ATGAGTCGGATCATAAATGACATTGAAGATGGGGAGCTCTCCAAGGATCAGACTGGGCCAAAGTTAAATGATGAGGGTAATGGAGGAAGTGCTGGTGGAGTTATTCTGAAGAAAGGGCCATGGACGTCTGCTGAAGATGCTATTTTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCCCGTTGTGGCAAAAGCTGCCGACTGCGATGGGCAAATCACCTTAGGCCAAATTTAAAGAAGGGGGCGTTTACTGCAGAAGAAGAGCAGTTGATTGCTGAACTCCACGCCAAGATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAACACCCGGATAAAGAGGCGTCAACGGGCTGGGTTGCCACTATATCCTCCTGAAGTGTGTTTGCAAGAATTGCAAGAGAGTCAGCATGGCCAAAGCAATGTTGGGAAGAATGAAGATGCGGGACATCATGATTTTGTGCAAGAGAACAGTTATGAGATACATGACACTGTATTTGACAATCTGAACGCCAATCAGGGAGTCTTACCTTATGTGCCAGAGCTTCCTGACATTTCTACTAATAGCATTCTGGTAAAAGGTCTAGGTTCTTCCCAGTACTGTAATTTTTTGCCAACAGCATTACCTTACCATAAGCGCCTTCATGAGTCAACAATGCCATTTCTTAGTTCAGCTGGTATAAACAGAAATGGGTTTTATCCGTTTGACCATATTCAGGATAATTCTTATGATAAGATTACGCAATCATTTGGATATCATTCTCCACTTGATCCTGGTCCCTCCTCACAGAAGTCACTGTGCTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCTAATTTTGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGGGTACATCTCCCCTGCCTCCTTTGCTCGAATCAGTTGATGCTTTCATAGGTACTCCTCCGCCAACTAGTGCAATGGAGTCAGATTCTTCTTCTCCATGTAATAGTGGCCTGCTGGATGCTTTAGTTTATCAGGCTAAGACTTTGAGCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCTAATTCATCTACTGCAACTCCTGGTGATATAGCAGACAGTTCCACTCTGCATATGTACGAGACAGAATGTGAAGACTATGCAGATTGTGTTTCTCCATTTGCTGCAACTTCAATCTTGAATGAATGTCTTGCTCTTAGTGCCAATGGGAACTCATTTGATGAACTGCAACCTGCACAGACCTTTAGTGGCAACATTGTGAAATTAGAATCTGCATACCAGGCTTTGACCCCCAACAGTGAAAATCAAAACATGTCGATGTTGGATAGCACCCGACCAGATGTTTTACTTGCTTCAGATTGGCTTGAGCAGGGTTCTGCATGTGGCAAGAACCAGGCTATCGTGACTGATTCCATAGCAACCCTCCTCGGTGACGACTTAGCCGTTGACTATAAGCACTTTTCTGCAGAAACTCCGACGTCAAGTCAAGTTTGGGGGCTTGATTCTTGCACATGGAATAATATGCTTGCTGTTTGTCAAATGTCCGATCTTCCTTGA	1659	0.4454	MSRIINDIEDGELSKDQTGPKLNDEGNGGSAGGVILKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQELQESQHGQSNVGKNEDAGHHDFVQENSYEIHDTVFDNLNANQGVLPYVPELPDISTNSILVKGLGSSQYCNFLPTALPYHKRLHESTMPFLSSAGINRNGFYPFDHIQDNSYDKITQSFGYHSPLDPGPSSQKSLCYSHSLSNGNSSTSKPNFEAVKLELPSLQYPETDLGSWGTSPLPPLLESVDAFIGTPPPTSAMESDSSSPCNSGLLDALVYQAKTLSSSKNHCSDKSSNSSTATPGDIADSSTLHMYETECEDYADCVSPFAATSILNECLALSANGNSFDELQPAQTFSGNIVKLESAYQALTPNSENQNMSMLDSTRPDVLLASDWLEQGSACGKNQAIVTDSIATLLGDDLAVDYKHFSAETPTSSQVWGLDSCTWNNMLAVCQMSDLP	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1613	552	FunFam	Transcription factor GAMYB	93	139	-	-
	Dere08g1613	552	ProSiteProfiles	Myb-like domain profile.	36	85	IPR001005	-
	Dere08g1613	552	CDD	SANT	40	85	IPR001005	-
	Dere08g1613	552	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	23	522	-	-
	Dere08g1613	552	FunFam	MYB-related transcription factor	37	90	-	-
	Dere08g1613	552	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dere08g1613	552	Gene3D	-	37	90	-	-
	Dere08g1613	552	MobiDBLite	consensus disorder prediction	1	19	-	-
	Dere08g1613	552	MobiDBLite	consensus disorder prediction	379	399	-	-
	Dere08g1613	552	ProSiteProfiles	Myb-like domain profile.	86	136	IPR001005	-
	Dere08g1613	552	Pfam	Myb-like DNA-binding domain	91	134	IPR001005	-
	Dere08g1613	552	Pfam	Myb-like DNA-binding domain	38	85	IPR001005	-
	Dere08g1613	552	SMART	sant	90	138	IPR001005	-
	Dere08g1613	552	SMART	sant	37	87	IPR001005	-
	Dere08g1613	552	CDD	SANT	93	134	IPR001005	-
	Dere08g1613	552	Gene3D	-	93	139	-	-
	Dere08g1613	552	SUPERFAMILY	Homeodomain-like	37	132	IPR009057	-
	Dere08g1613	552	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	33	85	IPR017930	-
	Dere08g1613	552	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	86	140	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1613	Dere-ChrDere08	21456435	21460181	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1613	35	545	MYB Transcription Factor Family	AT3G11440	44.802	9.56e-132	393

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere08g1613		Myb_DNA-binding	5.1e-15	CL0123