Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1612 ATGTCCTCAGAGCCTCTGAGGGTAGTGGTGATCCAGGATGCATCAAGAGATGTCAGTACAAGTGCAATAAAAAAGGCCCTGAAACAGATATCTCTTAAGCCTGGTGATGAGCTCACACTTCTTGCAATACTTGTGAAGTACAACATGAAGTTGGATTCAAGTTCATTTTTTGCAACGGAGCAGAAAATTTCTGAGGAAGAACTTGGCAAGAAAAAAGAAGAATATTATAAGAGTCCACAGATCATGAAACTCTCTGAGTATTGTGAAGCAAAAGATATTGTATTCCAGATAGAAGTGCTTGCTGGCCCTTCTCCAGAGGTGGCTTCTAATGCTGCCAAGAAATTTAGGGCAACATGGTTGATACTTGATAGTCCGATGAACAAAGATAAGAGGCACTTCATGGACAATCTCTCTTGTGGTATGTATAGGATAAGGAAACATAGTTGCATTAAAAAGCTAAGAAAGCCAAAACTAGCAGAGAACACCAAATCGCTTGCTGAGAGAACAGATCATGTAAGATATATGGAAATGATACCAGGAAGCTCAGAGGAAGAATTTTCTCTTAAGAGACCTAGATCATCATCAAGTGAACATGTAATGGCACTTGGAGTTTCAGGTCTTCAAAATACCAAAGCCTTGACCTCTAGTCATTATCTAAAATGTCAAGAGGAACAAAATTCTTCAAAGATTAAACACAAAACAGCAGATCGACCTTCAGCATTTGACATTTCTCAGAGTAAACAGGTAGGCCAAACAGAAGTACCTCAACATCAAATGAAGGAAGAGTTTGCAAACCCACTTTGTTTAGTGTGCAAGAACAAAAGACCGAAAGTTGGATGGAAGAGAGAGTTCAGTTACTTAGAGCTTCAGACAGCCACACAAGGATTTTCTAAGAAAAATTTTCTATCAGAAGGTGGATTTGGATCAGTATACAAAGGGCAGATAGATGGAATGACAATTGCTGTTAAGCAAACCAAATGTGCTAGCCTTCAAGGAGAGAAGGAGTTCAAGTCTGAAGTTAATCTACTAAGCAAAGCAAAACATGAGCACGTGCTCATGCTGCTGGGGTCATGCTCAGAAGGAGACAATAGGCTACTTGTTTATGAATATGTATGCAATGGTTCTCTGGACCAACATCTATCTGAACACTCTCGAGCTCCTCTTAATTGGGAAGACAGGATTAAAGTAGCTATTGGATCTGCCAAAGGCTTACTCTACTTGCACGAGAATAACATCATACACAGAGATATGAGACTAAGTAATATCCTCATAACACATGATCATCAACCACTGCTGGGAGACTTTGGTTTGGCAAGAAGTCAACATCAAGACTCAATACAATCAACAGAGGTTATCGGGACTTTTGGATATCTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAACCAAGACAGATGTGTATTCTTTCGGGGTAATCCTATTGCAGCTGATAACTGGAATGAGGACTACAGACCAAAGACTTGGAGGCAGAAGTCTTGTGGGATGGGCAAGGCCACTATTAAGAGATAGGAATTACCCAGACCTAATTGACCAAAGGATCATGAATTCTCATGACTTCCATCAGCTCTTTTGGATGGTACGAATAGCAGAGAAATGTCTAAGTAAGGACCCTCGCAAGAGATTAAATATGGTTGCGGTGGTTAATGCTTTAACTCACATAGTGGAGGGCCACATATGTGGGATCATACTCAGAGATTGCTCCCCTGTGAGGTCAGATTCATTCTATAGCACATCTGGTGAATCATCAGAAGATGAAATGAACCAGTCAGAAGGTGAGTTAGGAGGTCCCAGTACAGATTCCACATCAAGTAGTAGCAACATGACTCAGATGATTTTAGGACTCCCAATGCCACCGTCCCCTCCAATGGACATCACTTCATGTAGTAGGTCAAGTTTAGTTAAGGTGCATGACCAATCAAGCTTTATGGTTGGTATTAATTTATGTTCTGAAGCACCTTTGCCAATGGAGGAGGTGGAAGAAGCTCTTTTGGCTGCCTTCCTTGGTGCACTAGAGAGATTAATGACCCTTATGACAATTTGGATCATCTCAAGTTTTCTCTTATTTTCGTATCATATTAGAGGAGAACAACGAATTGACTGTGACAAAAGCGAAGCATGTGAGATGGCATTAGAAGAGTTCAAGAACAGTGTTTGCCAAGTGTGCGAGAACAGAAGGCCAAGAATTGAGAGGAAGAGGGAGTTCACATTTGCAGAGCTGTGTGCAGCTACAGGGGGGTTTTCTGCAAAGAACTTTCTGTCAGAGGGAGGGTGTGGGGCTGTGTTCAAAGGGGAGCTTCAGGGGATGAAGATTGCTGTTAAGCAACACAGACATGCACACCTCCATGGGGACAAGGAGTTCAAGTCGGAGGTTGATGCTCTCAGCAAAGCAAGACATGAGAATGTTATTGTTTTGTTGGGATCTTGTTCTGAAGGAAATCATAGGCTGCTTGTCTCTGAATATGTCTGCAATGGTTCACTCGACCAGCATTTATCACAACACAGCCGGAAGCCTCTGAGTTGGCAAAACAGGATCAAAGTAGCAATGGGAGCAGCAAAAGGCTTACTCTACTTGCATCAAAACAACATCATACACAGAGACATAAAACCAAACAACATTCTCCTCACTCATGATTATGAAGCCTTGCTGCGAGATTTTGGTCCGGCAACAAGTGCAGCAGAAGACTGGTCAGACTCAAGAGAGATATGTGTAGGACGTGCAGGGTATTTGGCACCAGAATATGCAGAATCTGGAAAAGTGTCAACAAAGACAGATGTGTATTCTTTTGGGGTGGTTCTCTTGCAGCTCATTACTGGAATGAGGATTACAGACAAAAGGCTTGGAAAAATAACTCTTGTGGAATGGGCAAGACCACTGTTAAAAGAAAAGAAATGCAGGCCTCTAATTGATGAAAGGATAATGAAATCGCATGACTGCCATCAATTCCTTTGCATGAGTCGTCTTGCTGAATGTTGTCTCACTAAAGATCCTCACAGGCGACTGACTATGGCCACCGTGGTGGAAGCCTTGAGTTATATATTGGAAGGCTGCACATGCAGTGTTAAAAACTGTTCTTCCTCTGCACATATGGATTCATCCCTTATCATGTCAGGCTCTTCTGAAACAAAAAAGTGA 3156 0.4195 MSSEPLRVVVIQDASRDVSTSAIKKALKQISLKPGDELTLLAILVKYNMKLDSSSFFATEQKISEEELGKKKEEYYKSPQIMKLSEYCEAKDIVFQIEVLAGPSPEVASNAAKKFRATWLILDSPMNKDKRHFMDNLSCGMYRIRKHSCIKKLRKPKLAENTKSLAERTDHVRYMEMIPGSSEEEFSLKRPRSSSSEHVMALGVSGLQNTKALTSSHYLKCQEEQNSSKIKHKTADRPSAFDISQSKQVGQTEVPQHQMKEEFANPLCLVCKNKRPKVGWKREFSYLELQTATQGFSKKNFLSEGGFGSVYKGQIDGMTIAVKQTKCASLQGEKEFKSEVNLLSKAKHEHVLMLLGSCSEGDNRLLVYEYVCNGSLDQHLSEHSRAPLNWEDRIKVAIGSAKGLLYLHENNIIHRDMRLSNILITHDHQPLLGDFGLARSQHQDSIQSTEVIGTFGYLAPEYAEYGKVSTKTDVYSFGVILLQLITGMRTTDQRLGGRSLVGWARPLLRDRNYPDLIDQRIMNSHDFHQLFWMVRIAEKCLSKDPRKRLNMVAVVNALTHIVEGHICGIILRDCSPVRSDSFYSTSGESSEDEMNQSEGELGGPSTDSTSSSSNMTQMILGLPMPPSPPMDITSCSRSSLVKVHDQSSFMVGINLCSEAPLPMEEVEEALLAAFLGALERLMTLMTIWIISSFLLFSYHIRGEQRIDCDKSEACEMALEEFKNSVCQVCENRRPRIERKREFTFAELCAATGGFSAKNFLSEGGCGAVFKGELQGMKIAVKQHRHAHLHGDKEFKSEVDALSKARHENVIVLLGSCSEGNHRLLVSEYVCNGSLDQHLSQHSRKPLSWQNRIKVAMGAAKGLLYLHQNNIIHRDIKPNNILLTHDYEALLRDFGPATSAAEDWSDSREICVGRAGYLAPEYAESGKVSTKTDVYSFGVVLLQLITGMRITDKRLGKITLVEWARPLLKEKKCRPLIDERIMKSHDCHQFLCMSRLAECCLTKDPHRRLTMATVVEALSYILEGCTCSVKNCSSSAHMDSSLIMSGSSETKK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1612 1051 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 829 1032 - -
Dere08g1612 1051 ProSitePatterns Tyrosine protein kinases specific active-site signature. 412 424 IPR008266 GO:0004672|GO:0006468
Dere08g1612 1051 Gene3D Phosphorylase Kinase; domain 1 725 828 - -
Dere08g1612 1051 Gene3D Phosphorylase Kinase; domain 1 270 370 - -
Dere08g1612 1051 ProSiteProfiles Protein kinase domain profile. 754 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1612 1051 SUPERFAMILY Protein kinase-like (PK-like) 738 1017 IPR011009 -
Dere08g1612 1051 Gene3D Transferase(Phosphotransferase) domain 1 371 566 - -
Dere08g1612 1051 Gene3D Transferase(Phosphotransferase) domain 1 829 1038 - -
Dere08g1612 1051 MobiDBLite consensus disorder prediction 582 613 - -
Dere08g1612 1051 SMART serkin_6 296 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1612 1051 SMART serkin_6 754 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1612 1051 FunFam Proline-rich receptor-like protein kinase PERK8 258 370 - -
Dere08g1612 1051 SUPERFAMILY Protein kinase-like (PK-like) 279 558 IPR011009 -
Dere08g1612 1051 Pfam Protein tyrosine and serine/threonine kinase 299 558 IPR001245 GO:0004672|GO:0006468
Dere08g1612 1051 Pfam Protein tyrosine and serine/threonine kinase 757 1017 IPR001245 GO:0004672|GO:0006468
Dere08g1612 1051 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 371 573 - -
Dere08g1612 1051 PANTHER OS01G0253100 PROTEIN 211 562 - -
Dere08g1612 1051 ProSiteProfiles Protein kinase domain profile. 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1612 1051 MobiDBLite consensus disorder prediction 599 613 - -
Dere08g1612 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 870 882 IPR008271 GO:0004672|GO:0006468
Dere08g1612 1051 FunFam Proline-rich receptor-like protein kinase PERK8 716 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1612 Dere-ChrDere08 21437908 21453288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1612 284 558 Trihelix Transcription Factor Family AT1G70460 48.611 4.48e-76 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Dere08g1612 PK_Tyr_Ser-Thr 1.3e-42 CL0016