Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1601 ATGGCAGCAAATGGTGTAGATCATCATCATTCTCCCTCTGATGCCTCAAGCATCTCAGGAGGCTCCAAAGGCAATTCCTCCAGAGAAGTTATCGAAAACCAGAAGATGAAGAAGATGAAGATGATTACACTTTCCAACGATGATTCAGTTCAAGGGTCGAAGGTTGAACTCAATTTCTTCAGTTCTGGGCCTAATTCGTCTTCTAGGGCAAACGTAAGCAACAAATTAGGGCAAGATGATGATCATGATCATGTGAACACACAGAAAACTTTCTGCTGCAACTTCTGCAAGAGAGAGTTTTCTTCCTCACAGGCCTTAGGAGGGCATCAAAATGCACACAAACAAGAGCGAGCACTCGCAAAACGACGTCACGTCGCTGATCACTTTGGAACTTTAGGACACCACCATCTTCCTTATTATACCAGTTACCCTTATTATGGGCATTTCAATTATCGCAGGGCTCTTGGGGTTAGAATGGAGTCCACGATTCACAAGCCGTTTTATAACCCTAATTACAGGTTCAGACGTGATCACCATGCTCAAGATAGGTTAGGAATAACGGCAAGTTCTGGAACTTCAAGGCTTGAGGAGGTTAATACTATTGGCCCTCTGGTTCAGTACTTTGGCCATAATTCTTCTTCTTCAACTAGCACTGGTGATCAACGTATCGAGTTCAAACCAGAAGAAGCTTCAAAAGGTGATGATAATAATCCTGATTTTTCGGGTCTTGATTTGTCTCTAAAGCTTTGA 750 0.428 MAANGVDHHHSPSDASSISGGSKGNSSREVIENQKMKKMKMITLSNDDSVQGSKVELNFFSSGPNSSSRANVSNKLGQDDDHDHVNTQKTFCCNFCKREFSSSQALGGHQNAHKQERALAKRRHVADHFGTLGHHHLPYYTSYPYYGHFNYRRALGVRMESTIHKPFYNPNYRFRRDHHAQDRLGITASSGTSRLEEVNTIGPLVQYFGHNSSSSTSTGDQRIEFKPEEASKGDDNNPDFSGLDLSLKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1601 249 MobiDBLite consensus disorder prediction 57 83 - -
Dere08g1601 249 Pfam C2H2-type zinc finger 91 115 - -
Dere08g1601 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 40 249 IPR044246 GO:0009788
Dere08g1601 249 MobiDBLite consensus disorder prediction 211 249 - -
Dere08g1601 249 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
Dere08g1601 249 MobiDBLite consensus disorder prediction 10 28 - -
Dere08g1601 249 Gene3D Classic Zinc Finger 67 131 - -
Dere08g1601 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Dere08g1601 249 SUPERFAMILY beta-beta-alpha zinc fingers 88 118 IPR036236 -
Dere08g1601 249 MobiDBLite consensus disorder prediction 1 28 - -
Dere08g1601 249 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1601 Dere-ChrDere08 21307402 21309524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1601 88 165 C2H2 Transcription Factor Family AT5G25160 51.250 5.82e-19 81.3