Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1600 ATGAGGAAGAAGCTTGATACCCGTTTTCCTGCTGCTCGGATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCACTAGCAGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTTTGCAAGATCTTTGTGACCGTACATATGAAATAACTCTTCAAAGAGGGGCAAAGACCATGAGTGCGTTGCATTTAAAACATTGTGTACAAAGCTATAATGTTTTTGATTTTCTGAGGGATGTCGTCAGCAGGGTTCCTGACTATGGTCATGGGCATGGCCATGGACATGGCCATTCTGACACTGGTGCTGATGATCGGGTCCTTCCAAAGAGAAGGAAAGCAGTAAATGATGATTCCCATGATAGCGATGAAGACTCTAAGAGGAGCAAGATGCATGAGTTGAGCCATACAGGCAATACTGGTAGGGGAAGAGGCCGAGGTAGAGGGAGAGGCCGTGGTCGAGGGACACGAAATGTTGAAAGAGAAAGAGAGTCTCATCATCGCGAGCTTGAATCCGAGCCTTGCACTTCTGTTCAGAACAGCAGCAAACATAATCCTGATACAAATATGGCAATGGATAATAATGATTCAGAGCCAAAGGAGTTGCTGAAGGACAATAATGCAGTTCCTGACGAAGGCACTCAGTTGGTTCGTAACATTGATCTGAATGCGAACCTGAATGAAAATGAAGACAAAAATGGCAGCACTGTAGTAGCTCCTGCGCCTTTGCCTGATCCTCCAAAAACTGAGACTAAGCATGAAGAAATTCCTGGCTGGTCTCTTTCTGATGTGGACAAGATGGCCATTGACACCATGCAGCTTGCACACCTTGGTAGACAAATAGAAGAGGAGGAGGAAGATTATGATGAAGAAGGCTAG 885 0.4463 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHGHGHSDTGADDRVLPKRRKAVNDDSHDSDEDSKRSKMHELSHTGNTGRGRGRGRGRGRGRGTRNVERERESHHRELESEPCTSVQNSSKHNPDTNMAMDNNDSEPKELLKDNNAVPDEGTQLVRNIDLNANLNENEDKNGSTVVAPAPLPDPPKTETKHEEIPGWSLSDVDKMAIDTMQLAHLGRQIEEEEEDYDEEG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1600 294 MobiDBLite consensus disorder prediction 115 212 - -
Dere08g1600 294 MobiDBLite consensus disorder prediction 228 258 - -
Dere08g1600 294 MobiDBLite consensus disorder prediction 176 197 - -
Dere08g1600 294 FunFam dr1-associated corepressor homolog 1 86 - -
Dere08g1600 294 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Dere08g1600 294 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Dere08g1600 294 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 133 - -
Dere08g1600 294 MobiDBLite consensus disorder prediction 91 110 - -
Dere08g1600 294 MobiDBLite consensus disorder prediction 155 175 - -
Dere08g1600 294 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Dere08g1600 294 MobiDBLite consensus disorder prediction 115 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1600 Dere-ChrDere08 21291111 21295314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1600 1 283 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.546 4.98e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere08g1600 CBFD_NFYB_HMF 2.8e-19 CL0012