Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1593 ATGTTGTCCGCCGACCCGCCGATCTCGGCCACCGGTGTCGGCCTCCGATACGGCATCGCCATCGCCGTCAGCATCCTCGTCCTCATCTCTACCATCATGCTCGCCTCCTACGCCTGCATCCGCATCAAGGCCAACGGCCGCCGGACCGCCTACATCAATCATGGCAGTGTCCGAAATAGTGATAACGGTGATAATGGTAATTCAGGTGAGCCTGTGGTGGTGATGGTGCTGGGCCTGGATAAGCCCGCGATAGAAGCCTACCCGAAGATTGTGCTAGGGGAGAGCCGGCGATTGCCCAGGCCCAACACCGGCCCATGCGCCATTTGCTTGGGTGAGTATGTGAAGGATGATACGGTGCGGTGCGTCCCAGAGTGCAACCACTGCTTCCACGCGGAGTGCTTGGACAAGTGGCTCCACCTGAGCGCCACCTGTCCTCTGTGTCGGAACTCTCCAGCTCCGTCGTCGGCGCCTACACCGGTGGCCACTCCTCTGTCGGAATTGGTTCCACTGGCTTCTCACACTAGGTGA 528 0.6023 MLSADPPISATGVGLRYGIAIAVSILVLISTIMLASYACIRIKANGRRTAYINHGSVRNSDNGDNGNSGEPVVVMVLGLDKPAIEAYPKIVLGESRRLPRPNTGPCAICLGEYVKDDTVRCVPECNHCFHAECLDKWLHLSATCPLCRNSPAPSSAPTPVATPLSELVPLASHTR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1593 175 PANTHER RING-H2 FINGER PROTEIN ATL67 11 174 IPR044289 GO:0016567|GO:0016740
Dere08g1593 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 153 IPR013083 -
Dere08g1593 175 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Dere08g1593 175 CDD RING-H2_EL5-like 106 148 - -
Dere08g1593 175 SMART ring_2 106 147 IPR001841 -
Dere08g1593 175 SUPERFAMILY RING/U-box 105 153 - -
Dere08g1593 175 Pfam Ring finger domain 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1593 Dere-ChrDere08 21177821 21178348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1593 7 175 C3H Transcription Factor Family AT5G07040 62.573 1.88e-64 193