Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1589 ATGGCATCGTCTTCGAGTTTATCGCCATGTGCTGCATGCAAGTGCCTGAGACGCAAGTGCCTGCCGGAGTGTGTGTTCGCACCGTACTTCCCGCCGGATCAGCCCCAGAAGTTCGCCAACGTTCACAAGGTCTTCGGAGCAAGCAACACCACCAAGCTTCTCAGCGACTTGCCGCCGCACCAGAGGAAAGACGCCGCAAAATCCCTCGCCTTTGAGGCCGACATGCGCCTCCGTGACCCAGTCTACGGCTGCGCCGGGGTCATCTCCCTCCTCCAGCGGCAACTCCAGCAACTCCGGTTGGACCTCGCCATCGCCAAATCCGAGCTCTCTAGGTGCCGGAGCCATGCCTTAGTTGCCGCTGCCGCCGCCCTCAACCACCAACACGTGCAAGACGTGGGGATGGTGAGTATGATTGGCGATGTCGGTGTATATGATTCTGACCAGAATTACTATTACCACCACTGTCACCATCGCCGTGAAGTGTTTAAAAGTTTTGAAGGAGGAAACAACCATGAGGTAGTGGTGGTGTGGGCTATTTTGAGGATGGATATTGATTCAGGGATTGGTGAACAAGAAGTAGAGGAGGTCTCACTAGATTGGAATGATGAGGTGGAAAGGGGTGCTGCAAATAAATCGTTGGTCGGGAAGTTGAGAACAGAATAG 663 0.5445 MASSSSLSPCAACKCLRRKCLPECVFAPYFPPDQPQKFANVHKVFGASNTTKLLSDLPPHQRKDAAKSLAFEADMRLRDPVYGCAGVISLLQRQLQQLRLDLAIAKSELSRCRSHALVAAAAALNHQHVQDVGMVSMIGDVGVYDSDQNYYYHHCHHRREVFKSFEGGNNHEVVVVWAILRMDIDSGIGEQEVEEVSLDWNDEVERGAANKSLVGKLRTE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1589 220 Coils Coil 88 108 - -
Dere08g1589 220 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Dere08g1589 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 130 - -
Dere08g1589 220 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1589 Dere-ChrDere08 21112585 21114629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1589 1 172 AS2 family AT1G65620 59.195 3.49e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere08g1589 LOB 4.1e-40 No_clan