Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1586 ATGAGCTTTCTGCAACACACAGAAGCCATGAACGCCGCGGAGCTTCAGGTGTGGGATAATGCCGCCTTCGTCAGCGATGAAGTACCCACGAAAGCTTCTTGGTCGAGTCTTCATCCTGTGTTCGAGAACCAGTCAGAATCCCTCGATTCTGATCGCAGCAAGGAGAATCTGAGCCCTGATAATGAGGACAAGGATGATGAAGATGATGAAGGAGTTACATCTGCTTGTGAGGCTCTGAGTTTTGCAGAAGAAGGAGAAGGACAGCCAATATGTGAGGCCCAGATTATTCTAGCGGGTCGGGTTAGTAGAGGAGAGAGTATCCAGAAACCCCAATTGGGAAGGTTAAAATTTTTACACACACGACGATACTCTGAAACCCTAGTTCATAGAGCCGTTTCTTCTTCCTCACTTCTCAAGCGGCTACCAGCTCCCTGGTTTTCTCCCTGTGCTTCAATCATGGCTACTGCGAGAACTGTCAAGGACGTGTCGCCTCACGAGTTCGTGAAGGCTTACTCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCCGAGTGGACAGACATTGTGAAGACTGCAAGATTTAAGGAACTGGCTCCATATGATCCTGATTGGTACTATGTTAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGCGAGGGGGTCTTGGTGTTGGTTCTTTCCAGAGGATATATGGTGGGAGCCAGAGGAATGGTAGCCGTCCTCCCCATTTCTGCAAGAGCAGCGGTGCTATTGCTCGTCACATTCTTCAACAGTTACAGAACATGAACATAGTTGAAATTGACCCCAAGGGTGGCAGGAGAATCACTTCCAGTGGTCAACGGGATCTTGACCAAGTTGCTGGCCGGATTGTGGTTGCCCCTTGA 888 0.4921 MSFLQHTEAMNAAELQVWDNAAFVSDEVPTKASWSSLHPVFENQSESLDSDRSKENLSPDNEDKDDEDDEGVTSACEALSFAEEGEGQPICEAQIILAGRVSRGESIQKPQLGRLKFLHTRRYSETLVHRAVSSSSLLKRLPAPWFSPCASIMATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNMNIVEIDPKGGRRITSSGQRDLDQVAGRIVVAP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1586 295 MobiDBLite consensus disorder prediction 45 60 - -
Dere08g1586 295 MobiDBLite consensus disorder prediction 41 73 - -
Dere08g1586 295 SMART Ribosomal_S19e_2 158 294 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere08g1586 295 FunFam 40S ribosomal protein S19 154 295 - -
Dere08g1586 295 Pfam Ribosomal protein S19e 158 292 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere08g1586 295 SUPERFAMILY "Winged helix" DNA-binding domain 158 293 IPR036390 -
Dere08g1586 295 ProSitePatterns Ribosomal protein S19e signature. 242 261 IPR018277 GO:0003735|GO:0005840|GO:0006412
Dere08g1586 295 PANTHER 40S RIBOSOMAL PROTEIN S19 151 291 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere08g1586 295 Gene3D - 146 294 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1586 Dere-ChrDere08 21038561 21044843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1586 153 295 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 84.615 3.94e-92 268