Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1571 ATGGCTTTTAGGATTAAGGAAGAAACAGAATCCTACAGAGTAGAAGAAGAAATTGAAGAAGATGATGATGATGATGAAGAGCCCGAAGGCTGGGACGACTGGAACGGGGAGGATGAGGCAGGAGAAGAGGGAGGCTCAGAATCGGATTTTCTGTGTCTTTTCTGTGATTCCAAGTACAGTTCGTGCGATTCCTTTTATGAGCATTGCGCCACAGATCACCACTTTGATTTCCATGGCATTAGGAAAGCTCTGGGTTTGGATTTCTATGGCTCCTTCAAGCTCATCAACTACATTCGCTCTCAGGTGGCAGAGAACAAATGTTGGAACTGTGAATTCACTTGCCAGTCCAACCAAGAACTACTGAATCATTTGCATGACACAGCAAACTTCAAGGATATTAAGCTTCAATGGGATGACGATAGATATCTCAAACCTTTTATACAAGATGATTCAGTGTTGTACAGTTTTGATGAATCTGAAGGTGAAGATGAGCAGACTACACCAATAAATGGGGAGGAACTTGTGAGGAATTTGAAGAACTCTGAAGAGATTTACAGTCGTGATCAAGATCCTGCTGAAAAGGCTGTTGTTCATGATGATAAATATAGTATGTGTAGAATAAAGGAGACCACTTCTGTTTCTGTCGATGGTATAAACAGTGCTAGTTCATCAGACAAGGATCTTATTGATGATAAGGAGTCAAGAGGATATGTTTCATCAAACGACAAGAACCAAGAAGCGCATTTGATGGCTAACTCTTCAAGTCGTCTTGCGAAGCACATCATGAAGGTTAATGAAAATTATTTTGGGTCTTATAGCTCATTTGGCATCCATCGTGAGATGCTGAGTGATAAGTTGAGGATGGATGCATATGGGAAAGCTATTTTGGAGAACCCCTCTCTCCTACACGGAGCTGTAGTTATGGATGTAGGTTGTGGAACTGGAATCCTCAGCCTATTTGCAGCTCAAGCAGGGGCTTCACGGGTTATTGCTGTTGAGGCTAGTGCTAAGATGGCAGCAGTAGCATCTAAGATTGCAAGTGATAATGGTCTTTGGCGTCATAATATCCAAAGTCAAGGTGATGGCCTACAGAAGGGAGTTATAGAAGTGGTTCAGGGTATGGTTGAAGAGGTTGATGAAAATGTTGAACTTCAACCCAATAGTGTTGATGTATTATTAAGTGAATGGATGGGATATTGCTTGCTGTATGAGTCCATGCTCAGCTCAGTCCTCTATGCACGGGACCGGTGGTTGAAGCCTGGAGGGGCCATTCTTCCTGACACAGCAACCATTTTTGTTGCAGGATTTGGAAAAGGGGGCACAAGTCTTCCCTTTTGGGAAAATGTGTGTGGTTTTGATATGTCTTGCATTGGCAAGGAGTTGGTTGACGATGCTGCTCAAGCTCCAATAGTTGATGTTGTGGACCATCAAGATTTGGTTACTAGTTCTGTGATTCTTCAGACCTTTGACTTGGCAACTATGAAGCCTAGTCAAGTGGATTTCACTGCAACTGCTACTTTGGAGCCAAATTTTACTGACACAAACACGCAATATTTAGATTCAAAAACATGGTGCTGGTGTTATGGAGTGGTCTTGTGGTTTGAAACTGGATTTACAAGCAGGTTCTGCCGAGAAGCACCGGCTGTGTTATCAACTTCTCCATACATGCCAAAAACACATTGGTCTCAAACTATCTTAACCTTTCGGGAGCCCATTGCCATGGGATCTGAAAAAACTAGTGAAGGAAAACTGGCAGCAATTGGTACTGATGTTTATCCTGCTGCAAAGATTGATTTGCGCATTAGCATTGTCCGATCTACTGAGCATCGAAGCATTGACATTTCCTTGGAAGCTGTTGGGGTTGGCCATGATGGTCGGAGACGCAGTTGGCCTGCACAACTCTTAAGTCTGCAGTAG 1917 0.4309 MAFRIKEETESYRVEEEIEEDDDDDEEPEGWDDWNGEDEAGEEGGSESDFLCLFCDSKYSSCDSFYEHCATDHHFDFHGIRKALGLDFYGSFKLINYIRSQVAENKCWNCEFTCQSNQELLNHLHDTANFKDIKLQWDDDRYLKPFIQDDSVLYSFDESEGEDEQTTPINGEELVRNLKNSEEIYSRDQDPAEKAVVHDDKYSMCRIKETTSVSVDGINSASSSDKDLIDDKESRGYVSSNDKNQEAHLMANSSSRLAKHIMKVNENYFGSYSSFGIHREMLSDKLRMDAYGKAILENPSLLHGAVVMDVGCGTGILSLFAAQAGASRVIAVEASAKMAAVASKIASDNGLWRHNIQSQGDGLQKGVIEVVQGMVEEVDENVELQPNSVDVLLSEWMGYCLLYESMLSSVLYARDRWLKPGGAILPDTATIFVAGFGKGGTSLPFWENVCGFDMSCIGKELVDDAAQAPIVDVVDHQDLVTSSVILQTFDLATMKPSQVDFTATATLEPNFTDTNTQYLDSKTWCWCYGVVLWFETGFTSRFCREAPAVLSTSPYMPKTHWSQTILTFREPIAMGSEKTSEGKLAAIGTDVYPAAKIDLRISIVRSTEHRSIDISLEAVGVGHDGRRRSWPAQLLSLQ 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1571 638 SUPERFAMILY beta-beta-alpha zinc fingers 27 167 IPR036236 -
Dere08g1571 638 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 265 595 IPR025799 GO:0016274|GO:0018216
Dere08g1571 638 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 583 IPR029063 -
Dere08g1571 638 MobiDBLite consensus disorder prediction 1 46 - -
Dere08g1571 638 Gene3D - 429 629 - -
Dere08g1571 638 MobiDBLite consensus disorder prediction 13 45 - -
Dere08g1571 638 CDD AdoMet_MTases 307 425 - -
Dere08g1571 638 Gene3D Vaccinia Virus protein VP39 257 426 IPR029063 -
Dere08g1571 638 FunFam Protein arginine N-methyltransferase 6 261 426 - -
Dere08g1571 638 Pfam Methyltransferase domain 307 422 IPR041698 -
Dere08g1571 638 Pfam C2H2 type zinc-finger (2 copies) 52 127 IPR041661 -
Dere08g1571 638 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 53 618 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1571 Dere-ChrDere08 20829710 20834097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1571 2 637 C2H2 Transcription Factor Family AT3G12270 54.012 0.0 657