Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1568 ATGGGCAGTAGAACCAGGGTTGGTTTAGAAGATGAGAAGGGACGAGCAAGAGGGATACCGAGCTTCGATTCGCAATTACCCATATCCAGTGCACGCTGTACTGAGGGAAGCACAATTGATTCCTTTCATGTTTCTGACTTTGGAGCATTTGATCAATCAGTTGGATATTGTGTAGAGAATGCTGCTGACCTGAGTGGAAGTAAATGCTCAGATTTAAACGCATTAAAAGTAAGTACCCAAACGACTTCTCCAGGTCCTGTTCACACAGGTAATTTTAAAAAGTTTCAAACTTCACTTGATAAAGAACGATCAACCAACCAAGCAGAGTCACGAAGGTTGCAATTACAGAAGGGTAAATCATCCAATCTGGGAACCATTTCAGGAGTTAATACAGAAAACCAGAAAGAGTCTGTCATGGCTGATGCCAGTCCTAGGACTGATATATCCACAGATGTTGATACTGATGATAAAAATCAGCAGTATGATAGAAATCAATCCCTTGCTGCTGTGGCTTCTGACTCCAGTGACCGATCAAAGGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGCCGGCTGAGAAAAAAAGCCTATGTCCAACAGTTGGAAAGCAGTCGTTTGAAGTTGACCCAACTAGAGCAAGAGCTTCAGCGAGCCAGACAGCAGGGAATCTTCATATCAAGTTCAGGCGACCAGGCACATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATACGCGAGGTGGCTGGAAGAGCAGAATCGCCAGATTAATGAGCTAAGAGCAGCTGTAAATTCTCATGCCGGTGATACAGAACTTCGCATGATTGTTGATAACATATTGGCTCACTATGATGAGATTTTTAGGCTGAAGGGTATTGCAGCTAAGGCTGATGTTTTCCATCTGTTGTCTGGAATGTGGAAAACACCTGCAGAGAGGTGTTTTCTATGGCTCGGTGGCTTTCGATCATCTGAACTCCTCAAGCTCCTGATAACTCACTTGGAACCTCTCACAGAACAGCAGCTGGTCGGCATTACCAACTTGCAGCAATCCTCCCAACAAGCCGAAGATGCATTATCTCAGGGTATGGAAGCTTTGCAACAGTCCCTAGCTGAGACATTGTCTAGTGGATCTCTTGGCTCATCTGGTTCCTCGGGGAATGTGGCAAATTACATGGGCCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAGGGCTTTATTCGGCAGGCTGACAATCTGCGGCAGCAAACACTGCAACAGATGCACCGTATATTGACAACCCGTCAATCAGCTCGGGCTCTCCTTGCAATACATGACTACTTCTCTCGGCTTCGAGCTCTTAGTTCCCTATGGCTGGCCCGTCCAAGAGATTGA 1413 0.46 MGSRTRVGLEDEKGRARGIPSFDSQLPISSARCTEGSTIDSFHVSDFGAFDQSVGYCVENAADLSGSKCSDLNALKVSTQTTSPGPVHTGNFKKFQTSLDKERSTNQAESRRLQLQKGKSSNLGTISGVNTENQKESVMADASPRTDISTDVDTDDKNQQYDRNQSLAAVASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAAVNSHAGDTELRMIVDNILAHYDEIFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLITHLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1568 470 Gene3D - 184 236 - -
Dere08g1568 470 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Dere08g1568 470 SMART brlzneu 181 244 IPR004827 GO:0003700|GO:0006355
Dere08g1568 470 MobiDBLite consensus disorder prediction 80 187 - -
Dere08g1568 470 FunFam BZIP family transcription factor 184 233 - -
Dere08g1568 470 CDD bZIP_HBP1b-like 185 237 - -
Dere08g1568 470 ProSiteProfiles DOG1 domain profile. 250 467 IPR025422 GO:0006351|GO:0043565
Dere08g1568 470 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700|GO:0006355
Dere08g1568 470 MobiDBLite consensus disorder prediction 1 21 - -
Dere08g1568 470 Pfam Basic region leucine zipper 181 227 IPR004827 GO:0003700|GO:0006355
Dere08g1568 470 Pfam Seed dormancy control 267 342 IPR025422 GO:0006351|GO:0043565
Dere08g1568 470 MobiDBLite consensus disorder prediction 109 144 - -
Dere08g1568 470 Coils Coil 261 281 - -
Dere08g1568 470 PANTHER TRANSCRIPTION FACTOR TGA9 123 469 - -
Dere08g1568 470 MobiDBLite consensus disorder prediction 1 18 - -
Dere08g1568 470 Coils Coil 204 231 - -
Dere08g1568 470 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Dere08g1568 470 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1568 Dere-ChrDere08 20774075 20788471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1568 139 470 bZIP Transcription Factor Family AT3G12250 79.518 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere08g1568 DOG1 2.7e-32 No_clan