Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1562 ATGAAAGTTCCTTGTTGTTCGGTTTGCCAAACACGGTACAACGAGGAGGAGAGAGTCCCGCTTCTGCTTCAATGCGGGCATGGCTTTTGCAGAGAGTGTCTATCGAGAATGTTCTCGGCATCCCTAGATACGACGTTGCCGTGTCCCAAGTGTCGCCATGTGTCTACTGTTGGGAACTCTGTTCAATCTCTGCGGAAAAACTACTCCGTGCTCGCGCTTATCCACTCAGCTTCAAACACGTCGGGGTCGAAATTTGACTGTGACTACTCAGACGACGAAGAGGACGGGGACAATGACGATGAATCAGTCATAAGCCGCCGCCGTGGGTCCCAGACGTCGAGCTCCGGCGGGTGTGGGCCGGTGATTGATGTCGGGGTGCACCAGGAATTGAAGTTGCTACGGCTAATAGGGGAGGGGAGGAGAGCTGGTATGGAAACGTGGACTGCTGTGATCGGTAGCAACAGCCGAAGTGGACAGTGCAGGCACCATGTGGCGGTGAAGAAGGTAGGAATAGCGGAGGGGGTGAATTTAAATTGTCTACAGGAGCAGCTTGAGAATTTGCGCCGTGCATCAATGTGGTGTAGAAATGTGTGCGCGTTTCATGGGGCGATGGAGGTGGATGAGAGTTTGTGTCTTGTGATGGACCGGTGTCATGGATCAGTTCAGTCTGAGATGCAGCGCAATGAGGGGCGACTTACTTTGGAGCAAGTCCTAAGATATGGGGCTGACATTGCACGAGGGGTAGCTGAGCTTCATGCTGCAGGTGTTGTTTGCATGAACCTAAAGCCATCCAATCTTCTTCTTGATGCAAATGGTCATGCAGTCGTTTCTGATTATGGGCTTGCTGGAATTCTGAAGAAGCCTTCCTGTTGGAAGGCCCAACCAGAGTGTGACTCCTCGAAGATCCATTCCTGTATGGAATGTATAATGCTTAGCCCACATTACGCAGCGCCAGAGGTTTGGGAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGGTGATGCAATAGGTGTATCTGCAGAGTCTGATGCTTGGAGTTTTGGCTGTACTTTGGTGGAAATGTGCACGGGTTTTATTCCTTGGGCTGGTTTAAGTGCAGAGGAAATTTATCGAGCAGCTGTCAAGGCACGGAAATTGCCTCCACAGTATGCTAGTGTTGTTGGTGGTGGAATACCTAGGGATTTGTGGAAGATGATTGGAGAGTGCTTGCAGTTCAAGCCGTCTAAAAGGCCTAGTTTTAGTGCAATGTTAGCAATATTTCTCCATCATTTGCAGGAAATACCACGCAGTCCTCCTGCAAGCCCTGATAAGGATTCTGTTCAATGCTCTGTGTCAAATGTGATAGAGGCTTCCCCCCGTCGAGCTGAATTGGAAGTTCCGCAGGATTTTGCAAACTATCTTCATCGACTTGTGTCTGAAGGGAATGTTAGAGGTGTTAGACATCTTCTTGCAAAGGCTGTCTCAGTAAATGGTAGCAACTACATATCTTCTCTATTGGAAGCTCAAAATGCTGATGGGCAAACTGCTCTTCACCTGGCTTGTAGACGTGGTAATGCAGAACTTGTTGAGGCTATTTTGGCATGCAAAGAGGCAGATGTTGATGTCTTGGACAAAGATGGAGATCCTCCACTTGTTTTTGCTTTAGCAGCTGGATCTCCAGAATGTGTTCATAGTCTTATCAAAAGAAATGCTAATGTGAGGTCTTGCTTGAAAGATGGCTTTGGCCCATCTCTTGCTCACATCTGTGCCTATCATGGCCAACCAGATTGCATGCGGGAACTATTATTGGCTGGAGCTGATCCAAATGCAGTCGATGATGAAGGTGAATCTGTACTGCACTGTGCAGTTGCCAAGAAGTATACAGACTGCGCTCTTGTGATATTAGAAAATGGGGGCTGCAGATCAATGGCCATCTTAAATTCAAAGAATTTGACACCACTGCACTTGTGTGTGGAAACATGGAATGTGGCTATTGTAAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGAAATACCAAGCCCTATTGGCACTGCATTGTGTATGGCAGCTGCATCTAAGAAAGACCATGAAATTGAGGGAAGGGAATTGGTGCAAATATTGCTTGCTGCAGGCGCAGACCCATCTGCTCAAGATTCACAATATGGGCGGACAGCTTTGCATACAGCTGTCATATCTAATGATGTTGAGTTGGTTAAGGTTATTCTTGGTGCTGGTGTTGACGTCAACATTCGTAATGAGCAAAATAGTACACCTCTTCATTTAGCTTTAGCTAGTGGAGCAAAGTCATGTGTTAAATTGCTTCTATCTGCTGGGGCAAATTATAATTTGCAGGACGATGATGGTGACAATGCTTTCCATAAAGCAGCGAAGGCAGCAAACATGGCACGTGAAAACCTTGACTGGCTTATTGTTATGTTAGAAAATCCTGATGCTGATGTCGAAGTCAGAAACCACAGGCAAGTTATGCTTTATGACAGTGGCAGGACGCTACGTGACATCTTACAGGCCCTTCCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTCAAGTATAGAGGAGTTCATCTAACTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAAAAGAACTGTCGCAACTCCAACTTATGGGTGGCAAGGTGCTAGCTCAAAAAGTGTTGGCTTTGTGCAAAGTGTTCCAAATAGAGATAACCTCATTGTTTCATTTTGTTCTGGAGAGGCTCGTGTTCTAGCAAATGAAGTTGTGAAAGTCATTCCTTTAGACAGGGGTCAACATGTGCAGCTTAAAGCAGAGGTTAAAGAGCCCAGGTTTGGTTGGCGTGAGCAGTTACGTGACAGCATAGGCACGGTATTATGTGTTGATGATGATGGGATCCTACGTGTTGGGTTTCCTGGAGCATCCAGAGGATGGAAAGCTGACCCAGCAGAGATGGAACGGGTTGAGGAATTCAAGGTCGGAGATTGGGTTCGTATTCGTCCCACTCTTACATCTGCAAAGCATGGATTAGGATCTGTGGCACCAGGAAGCATTGGTATTGTATCTTATATCAGACCAGACAGTAGCCTGCTGATAGATCTTAGCTATCTTCCAACTCCATGGCATTGTGAACCAGAAGAGGTTGAGCATGTTACTCCTTTTAGGATTGGTGATCGGGTATGTGTGAAGCGATCTGTTGCAGAACCTAGATGTGCTTGGGGAGGTGAGACACATCATAGTGTTGGAAGAATCAGTGAGATTGAGAATGATGGTCTCCTAATAATTGATATACCGAACCGACCAATACCTTGGCAAGCTGATCCATCAGATATGGAGAAGCTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTAAAATCTTCAGTGTCTTCCCCAAGATATGGATGGGAGGATGTTACTAGGAACAGTATGGGGGTAATTCACAGCTTGGAGGAAGACGGCAATATGTGTATTGCCTTTTGCTTCAGAAGTAAGCCTTTCTGTTGCTCTGTCACTGACGTGGAGAAAGTTCCCCCTTTCGTGGTGGGACAAGAAATTCATGTGATGCCATCTGTTACTCAACCACGACTTGGATGGTCGAATGAATCACCAGCTACTGTTGGAAAAATAGTGAGCATTGACATGGATGGTGCTCTCAATGTGAGAGTCACAGGGAGGCAGAGCCTGTGGAAGGTTTCTCCTGGAGATGCAGAAGGACTTTCAGGATTTGAAGTGGGTGATTGGGTACGCTCAAAACCAAGCCTAGGAACCAGACCAAGTTATGATTGGAATAGTACTGGGAAAGATGGTATAGCGGTTGTGTACAGTGTACAGGATTCTGGATACTTAGAGTTGGCATGCTGTTATCGTAAAGTGAGGTACCATACTCATTATACAGACGTTGAAAAGGTTCCTTGCTTTAAAGTCGGGCAGTATGTTCGGTACCGAACTGGTTTGGTTGAACCAAGGTGGGGCTGGAGAGGAGCTCAGCCTGAATCTCGAGGTGTTATAATTAGTGTTCATGCTGATGGAGAAGTGAGAGTAGCATTCTCTGGTTTGCCAGGTTTGTGGAGAGGAGATCCGGCAGACCTTGAGATTGAGCAGATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAAAGATAATGCAAGTAATTGGAAATCCATTGGGCCAGGTAGCATTGGTGTTGTACAAGGGATAGGGTTTGATGGTGATGAATGGGATGGAAGCACTTATATTGGCTTTTGTCGGGAGCAAGAAAGTTGGGTAGGACCAACTTCTGATCTTGAAAAAGTTAACAAACTCTACGTCGGACAGAAGGTTAGAGTTAAACAATCTGTAAAGAATCCGAGATTTGGGTGGGCAGGTCACACCCATGCTAGCATTGGAACCATATCAGCAATCGATGCTGACGGAAAGCTTCGAATATACACTCCAGCAGGATCAAAACCGTGGATGTTGGACCCATCAGAAGTAGATTTAGTCGAGGAGGAGGGGCTACAGATTGGAGATTGGGTGAGGGTTAGAGCGTCAGTTTCAACCCCAACCCACCAGTGGGGAGAAGCGAGTCATTTGAGCATCGGGGTGGTGCATCGGATGGAAGATGAGGATCTATGGGTGGCATTCTGTTTCACGGAGAGACTTTGGCTTTGTAAGGCATGGGAAATGGAACGGGTGAGGCCATTCAAAATTGGGGACAAGGTAAGGATCAGAGATGGACTTGTGAACCCAAGGTGGGGATGGGGAATGGAGACACACGCTAGTAAGGGAGAGGTGGTAGGGGTTGATGCTAATGGGAAACTAAAAATTAAATTCAGGTGGAGGGAAGGGAAGCCCTGGATAGGAGACCCTGCTGATATTGTTCATGATGAAAAGTGA 4878 0.4651 MKVPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSRMFSASLDTTLPCPKCRHVSTVGNSVQSLRKNYSVLALIHSASNTSGSKFDCDYSDDEEDGDNDDESVISRRRGSQTSSSGGCGPVIDVGVHQELKLLRLIGEGRRAGMETWTAVIGSNSRSGQCRHHVAVKKVGIAEGVNLNCLQEQLENLRRASMWCRNVCAFHGAMEVDESLCLVMDRCHGSVQSEMQRNEGRLTLEQVLRYGADIARGVAELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLAGILKKPSCWKAQPECDSSKIHSCMECIMLSPHYAAPEVWEPVKKSLNLFWGDAIGVSAESDAWSFGCTLVEMCTGFIPWAGLSAEEIYRAAVKARKLPPQYASVVGGGIPRDLWKMIGECLQFKPSKRPSFSAMLAIFLHHLQEIPRSPPASPDKDSVQCSVSNVIEASPRRAELEVPQDFANYLHRLVSEGNVRGVRHLLAKAVSVNGSNYISSLLEAQNADGQTALHLACRRGNAELVEAILACKEADVDVLDKDGDPPLVFALAAGSPECVHSLIKRNANVRSCLKDGFGPSLAHICAYHGQPDCMRELLLAGADPNAVDDEGESVLHCAVAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVETWNVAIVKRWVEVATSDEIAEAIEIPSPIGTALCMAAASKKDHEIEGRELVQILLAAGADPSAQDSQYGRTALHTAVISNDVELVKVILGAGVDVNIRNEQNSTPLHLALASGAKSCVKLLLSAGANYNLQDDDGDNAFHKAAKAANMARENLDWLIVMLENPDADVEVRNHRQVMLYDSGRTLRDILQALPREWISEDLMEALKYRGVHLTPTIFEVGDWVKFKRTVATPTYGWQGASSKSVGFVQSVPNRDNLIVSFCSGEARVLANEVVKVIPLDRGQHVQLKAEVKEPRFGWREQLRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVAPGSIGIVSYIRPDSSLLIDLSYLPTPWHCEPEEVEHVTPFRIGDRVCVKRSVAEPRCAWGGETHHSVGRISEIENDGLLIIDIPNRPIPWQADPSDMEKLEDFKVGDWVRVKSSVSSPRYGWEDVTRNSMGVIHSLEEDGNMCIAFCFRSKPFCCSVTDVEKVPPFVVGQEIHVMPSVTQPRLGWSNESPATVGKIVSIDMDGALNVRVTGRQSLWKVSPGDAEGLSGFEVGDWVRSKPSLGTRPSYDWNSTGKDGIAVVYSVQDSGYLELACCYRKVRYHTHYTDVEKVPCFKVGQYVRYRTGLVEPRWGWRGAQPESRGVIISVHADGEVRVAFSGLPGLWRGDPADLEIEQMFEVGEWVRLKDNASNWKSIGPGSIGVVQGIGFDGDEWDGSTYIGFCREQESWVGPTSDLEKVNKLYVGQKVRVKQSVKNPRFGWAGHTHASIGTISAIDADGKLRIYTPAGSKPWMLDPSEVDLVEEEGLQIGDWVRVRASVSTPTHQWGEASHLSIGVVHRMEDEDLWVAFCFTERLWLCKAWEMERVRPFKIGDKVRIRDGLVNPRWGWGMETHASKGEVVGVDANGKLKIKFRWREGKPWIGDPADIVHDEK 1625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1562 1625 SUPERFAMILY Ankyrin repeat 571 799 IPR036770 -
Dere08g1562 1625 Pfam RING-type zinc-finger 6 49 IPR027370 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 1371 1492 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 1244 1365 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 920 986 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 1500 1619 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 1118 1236 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 992 1112 IPR040847 -
Dere08g1562 1625 Pfam Mind bomb SH3 repeat domain 868 912 IPR040847 -
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat profile. 753 785 IPR002110 GO:0005515
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Dere08g1562 1625 PRINTS Ankyrin repeat signature 506 521 IPR002110 GO:0005515
Dere08g1562 1625 PRINTS Ankyrin repeat signature 769 783 IPR002110 GO:0005515
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat profile. 505 538 IPR002110 GO:0005515
Dere08g1562 1625 SUPERFAMILY Protein kinase-like (PK-like) 156 434 IPR011009 -
Dere08g1562 1625 SMART ring_2 6 51 IPR001841 -
Dere08g1562 1625 Pfam Ankyrin repeats (3 copies) 467 566 IPR002110 GO:0005515
Dere08g1562 1625 Pfam Ankyrin repeats (3 copies) 699 784 IPR002110 GO:0005515
Dere08g1562 1625 Pfam Ankyrin repeats (3 copies) 580 660 IPR002110 GO:0005515
Dere08g1562 1625 FunFam E3 ubiquitin-protein ligase KEG 444 675 - -
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat region circular profile. 505 538 - -
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Dere08g1562 1625 Gene3D - 443 573 IPR036770 -
Dere08g1562 1625 Pfam Protein kinase domain 161 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1562 1625 Gene3D Transferase(Phosphotransferase) domain 1 127 442 - -
Dere08g1562 1625 SUPERFAMILY RING/U-box 5 58 - -
Dere08g1562 1625 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Dere08g1562 1625 CDD RING-HC_KEG-like 3 59 - -
Dere08g1562 1625 Gene3D - 719 828 IPR036770 -
Dere08g1562 1625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Dere08g1562 1625 SUPERFAMILY Ankyrin repeat 464 574 IPR036770 -
Dere08g1562 1625 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat region circular profile. 753 785 - -
Dere08g1562 1625 ProSiteProfiles Protein kinase domain profile. 130 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1562 1625 ProSiteProfiles Ankyrin repeat region circular profile. 720 752 - -
Dere08g1562 1625 CDD STKc_PknB_like 131 418 - -
Dere08g1562 1625 SMART ANK_2a 720 749 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 786 821 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 642 673 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 574 603 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 753 782 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 505 535 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 539 568 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 607 638 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 462 491 IPR002110 GO:0005515
Dere08g1562 1625 SMART ANK_2a 680 715 IPR002110 GO:0005515
Dere08g1562 1625 MobiDBLite consensus disorder prediction 82 119 - -
Dere08g1562 1625 Gene3D - 574 718 IPR036770 -
Dere08g1562 1625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 1624 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Dere08g1562 1625 FunFam E3 ubiquitin-protein ligase KEG 218 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1562 Dere-ChrDere08 20669489 20692588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1562 138 423 MAP Kinase Kinase Kinase AT4G08470 28.179 1.47e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Dere08g1562 Pkinase 7.4e-29 CL0016