Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere08g1560 | ATGATGCAGTGTGTCTATGAGTTGGAAGACGAGGGTTGGCCCGGGGGTGGTGTTTCACACTCCAGGGATGGCATTCCATCTGCTCGTCATAAAAGAGGAGCATTGACCAATTTCCAGCCAAATTCCCTACCTGCAATGCACCACTACGACAAGAATAGTGTAACCCGACCCGAAACCATCATAATAGGGTTTAAGTTTCCACGAGCAGCCTCTTCCTCCACTAGCAGCTGCTACGTCTCGGTTTACTGTTCTTCCCAAGATCTGGGTAGTGCTCCCTTAGACTCAGTGCTAGAAGATACTGGCGTTGATAATCTCGATTCGCGTATAGTGTACTTATTGCATGATACGAAGATGGATGAGGCGGGGGAAGCAGTAGAGAGGCCTATTTTCAGAGACATTAGACGCTATTTCTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGACCTTAATAACCGCTCATATCAATACCCACCACAAGGAGGAGGCTGAGAAAGCTAGAGTTAATAGGGATCACGAAGCAGAGGATGCAAAAACCAACACTTGCGAGGAATGTGGCGCTAGTTTTAAGAAGCCTGCATACTTAAAGCAACACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTACCGTTGAAGATTGCCTGGCAAGTTACAGAAGAAAGGACCATTTGACCCGTCACTTTCTTCAACATCAAGGGAAAACTTTTAAATGTCCAATTGAGAATTGCAACTGTGACTTCGCTTTCCATGGAAATATGACAAGACATGTCAAGGAATTTCATAATGAGGATTCCCCCTCTTCGACTGCCGAAAGCCAGAAGCAGTATGTTTGCCCGGAAGCTGGGTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTAAAAAAGCATGAAAATTCTCATGTTAAGCTGGAGTCAGTAGAGGTGGTTTGCTTAGATCCCGGATGTATGAAGCATTTCACTAATGTCCAATGTCTTCAAGAACATATTAAATCTTGCCACCAATATGTGACCTGTGAGATCTGCTGGACAAAACAACTGAAGAAGAATATTAAGCGACACCTGCGTATGCATGAAAATGGTAGCTCAACAGAGGAATTTAAATGTGAATTCAAGGATTGTAGCAGCACATTCTCAAGTAAATCTAATCTTCAGAAACATGTGAAGGCTGTGCACTTTGAAGACAAACCTTTTGTGTGTGGCTTTCCTAATTGTGGCATGAGATTTTCTTACAAACATGTGAGAGATAAACACGAGAAAACTGGGTCTCATGTCTATACCCTTGGGGATTTTGCAGAAGCTGACGAGCAATTCAGGTCAAGGCCAAGAGGAGGGCGAAAGAGAACTTGCCCTACAGTTGAAACGTTAGTTAGGAAAAGAGTTACTCCTCCCAGTCAATTGGAGCACTGGTTACTCATGCCGGAGGATGAGTAG | 1434 | 0.4407 | MMQCVYELEDEGWPGGGVSHSRDGIPSARHKRGALTNFQPNSLPAMHHYDKNSVTRPETIIIGFKFPRAASSSTSSCYVSVYCSSQDLGSAPLDSVLEDTGVDNLDSRIVYLLHDTKMDEAGEAVERPIFRDIRRYFCEYCGICRSKKTLITAHINTHHKEEAEKARVNRDHEAEDAKTNTCEECGASFKKPAYLKQHMQSHSLERPYVCTVEDCLASYRRKDHLTRHFLQHQGKTFKCPIENCNCDFAFHGNMTRHVKEFHNEDSPSSTAESQKQYVCPEAGCGKVFKFASKLKKHENSHVKLESVEVVCLDPGCMKHFTNVQCLQEHIKSCHQYVTCEICWTKQLKKNIKRHLRMHENGSSTEEFKCEFKDCSSTFSSKSNLQKHVKAVHFEDKPFVCGFPNCGMRFSYKHVRDKHEKTGSHVYTLGDFAEADEQFRSRPRGGRKRTCPTVETLVRKRVTPPSQLEHWLLMPEDE | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 369 | 392 | IPR013087 | - | |
| Dere08g1560 | 477 | Gene3D | Classic Zinc Finger | 233 | 271 | - | - | |
| Dere08g1560 | 477 | Pfam | Zinc finger, C2H2 type | 277 | 301 | IPR013087 | - | |
| Dere08g1560 | 477 | Pfam | Zinc finger, C2H2 type | 181 | 202 | IPR013087 | - | |
| Dere08g1560 | 477 | Pfam | Zinc finger, C2H2 type | 367 | 392 | IPR013087 | - | |
| Dere08g1560 | 477 | SUPERFAMILY | beta-beta-alpha zinc fingers | 349 | 406 | IPR036236 | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 279 | 301 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 311 | 334 | IPR013087 | - | |
| Dere08g1560 | 477 | SUPERFAMILY | beta-beta-alpha zinc fingers | 178 | 232 | IPR036236 | - | |
| Dere08g1560 | 477 | FunFam | Zinc finger 45-like | 178 | 203 | - | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 400 | 424 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 367 | 397 | IPR013087 | - | |
| Dere08g1560 | 477 | Gene3D | Classic Zinc Finger | 208 | 232 | - | - | |
| Dere08g1560 | 477 | Gene3D | Classic Zinc Finger | 272 | 302 | - | - | |
| Dere08g1560 | 477 | Gene3D | Classic Zinc Finger | 362 | 428 | - | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 367 | 392 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 237 | 262 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 398 | 424 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 136 | 158 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 309 | 334 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 337 | 358 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 277 | 301 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 180 | 202 | IPR013087 | - | |
| Dere08g1560 | 477 | SMART | c2h2final6 | 208 | 232 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 237 | 267 | IPR013087 | - | |
| Dere08g1560 | 477 | Gene3D | Classic Zinc Finger | 121 | 207 | - | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 277 | 306 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 210 | 232 | IPR013087 | - | |
| Dere08g1560 | 477 | SUPERFAMILY | beta-beta-alpha zinc fingers | 274 | 303 | IPR036236 | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 163 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 239 | 262 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 182 | 202 | IPR013087 | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 208 | 237 | IPR013087 | - | |
| Dere08g1560 | 477 | PANTHER | ZINC FINGER PROTEIN | 116 | 466 | - | - | |
| Dere08g1560 | 477 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 180 | 207 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere08g1560 | Dere-ChrDere08 | 20643753 | 20653362 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere08g1560 | 204 | 427 | C2H2 Transcription Factor Family | AT1G72050 | 51.449 | 7.96e-95 | 288 |
Transcription factors information