Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1560 ATGATGCAGTGTGTCTATGAGTTGGAAGACGAGGGTTGGCCCGGGGGTGGTGTTTCACACTCCAGGGATGGCATTCCATCTGCTCGTCATAAAAGAGGAGCATTGACCAATTTCCAGCCAAATTCCCTACCTGCAATGCACCACTACGACAAGAATAGTGTAACCCGACCCGAAACCATCATAATAGGGTTTAAGTTTCCACGAGCAGCCTCTTCCTCCACTAGCAGCTGCTACGTCTCGGTTTACTGTTCTTCCCAAGATCTGGGTAGTGCTCCCTTAGACTCAGTGCTAGAAGATACTGGCGTTGATAATCTCGATTCGCGTATAGTGTACTTATTGCATGATACGAAGATGGATGAGGCGGGGGAAGCAGTAGAGAGGCCTATTTTCAGAGACATTAGACGCTATTTCTGTGAATACTGTGGCATCTGCAGGTCCAAGAAGACCTTAATAACCGCTCATATCAATACCCACCACAAGGAGGAGGCTGAGAAAGCTAGAGTTAATAGGGATCACGAAGCAGAGGATGCAAAAACCAACACTTGCGAGGAATGTGGCGCTAGTTTTAAGAAGCCTGCATACTTAAAGCAACACATGCAAAGCCATTCACTTGAGAGGCCATATGTGTGTACCGTTGAAGATTGCCTGGCAAGTTACAGAAGAAAGGACCATTTGACCCGTCACTTTCTTCAACATCAAGGGAAAACTTTTAAATGTCCAATTGAGAATTGCAACTGTGACTTCGCTTTCCATGGAAATATGACAAGACATGTCAAGGAATTTCATAATGAGGATTCCCCCTCTTCGACTGCCGAAAGCCAGAAGCAGTATGTTTGCCCGGAAGCTGGGTGTGGAAAGGTTTTCAAATTTGCATCAAAGCTAAAAAAGCATGAAAATTCTCATGTTAAGCTGGAGTCAGTAGAGGTGGTTTGCTTAGATCCCGGATGTATGAAGCATTTCACTAATGTCCAATGTCTTCAAGAACATATTAAATCTTGCCACCAATATGTGACCTGTGAGATCTGCTGGACAAAACAACTGAAGAAGAATATTAAGCGACACCTGCGTATGCATGAAAATGGTAGCTCAACAGAGGAATTTAAATGTGAATTCAAGGATTGTAGCAGCACATTCTCAAGTAAATCTAATCTTCAGAAACATGTGAAGGCTGTGCACTTTGAAGACAAACCTTTTGTGTGTGGCTTTCCTAATTGTGGCATGAGATTTTCTTACAAACATGTGAGAGATAAACACGAGAAAACTGGGTCTCATGTCTATACCCTTGGGGATTTTGCAGAAGCTGACGAGCAATTCAGGTCAAGGCCAAGAGGAGGGCGAAAGAGAACTTGCCCTACAGTTGAAACGTTAGTTAGGAAAAGAGTTACTCCTCCCAGTCAATTGGAGCACTGGTTACTCATGCCGGAGGATGAGTAG 1434 0.4407 MMQCVYELEDEGWPGGGVSHSRDGIPSARHKRGALTNFQPNSLPAMHHYDKNSVTRPETIIIGFKFPRAASSSTSSCYVSVYCSSQDLGSAPLDSVLEDTGVDNLDSRIVYLLHDTKMDEAGEAVERPIFRDIRRYFCEYCGICRSKKTLITAHINTHHKEEAEKARVNRDHEAEDAKTNTCEECGASFKKPAYLKQHMQSHSLERPYVCTVEDCLASYRRKDHLTRHFLQHQGKTFKCPIENCNCDFAFHGNMTRHVKEFHNEDSPSSTAESQKQYVCPEAGCGKVFKFASKLKKHENSHVKLESVEVVCLDPGCMKHFTNVQCLQEHIKSCHQYVTCEICWTKQLKKNIKRHLRMHENGSSTEEFKCEFKDCSSTFSSKSNLQKHVKAVHFEDKPFVCGFPNCGMRFSYKHVRDKHEKTGSHVYTLGDFAEADEQFRSRPRGGRKRTCPTVETLVRKRVTPPSQLEHWLLMPEDE 477
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 369 392 IPR013087 -
Dere08g1560 477 Gene3D Classic Zinc Finger 233 271 - -
Dere08g1560 477 Pfam Zinc finger, C2H2 type 277 301 IPR013087 -
Dere08g1560 477 Pfam Zinc finger, C2H2 type 181 202 IPR013087 -
Dere08g1560 477 Pfam Zinc finger, C2H2 type 367 392 IPR013087 -
Dere08g1560 477 SUPERFAMILY beta-beta-alpha zinc fingers 349 406 IPR036236 -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 279 301 IPR013087 -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 311 334 IPR013087 -
Dere08g1560 477 SUPERFAMILY beta-beta-alpha zinc fingers 178 232 IPR036236 -
Dere08g1560 477 FunFam Zinc finger 45-like 178 203 - -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 400 424 IPR013087 -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 367 397 IPR013087 -
Dere08g1560 477 Gene3D Classic Zinc Finger 208 232 - -
Dere08g1560 477 Gene3D Classic Zinc Finger 272 302 - -
Dere08g1560 477 Gene3D Classic Zinc Finger 362 428 - -
Dere08g1560 477 SMART c2h2final6 367 392 IPR013087 -
Dere08g1560 477 SMART c2h2final6 237 262 IPR013087 -
Dere08g1560 477 SMART c2h2final6 398 424 IPR013087 -
Dere08g1560 477 SMART c2h2final6 136 158 IPR013087 -
Dere08g1560 477 SMART c2h2final6 309 334 IPR013087 -
Dere08g1560 477 SMART c2h2final6 337 358 IPR013087 -
Dere08g1560 477 SMART c2h2final6 277 301 IPR013087 -
Dere08g1560 477 SMART c2h2final6 180 202 IPR013087 -
Dere08g1560 477 SMART c2h2final6 208 232 IPR013087 -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 267 IPR013087 -
Dere08g1560 477 Gene3D Classic Zinc Finger 121 207 - -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 306 IPR013087 -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 210 232 IPR013087 -
Dere08g1560 477 SUPERFAMILY beta-beta-alpha zinc fingers 274 303 IPR036236 -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 239 262 IPR013087 -
Dere08g1560 477 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 237 IPR013087 -
Dere08g1560 477 PANTHER ZINC FINGER PROTEIN 116 466 - -
Dere08g1560 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere08g1560 Dere-ChrDere08 20643753 20653362 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1560 204 427 C2H2 Transcription Factor Family AT1G72050 51.449 7.96e-95 288
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1560 zf-C2H2 0.0013 CL0361