Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1542 ATGTTTGAGTTCGCCAAGCAAGTGAGTAAGCTTTGTCTGATGCAAAAAAGTCCAAAGTCACATGTCGATGCAACTACATTTCCAGCAAGCGAACTCATACCTCAAACAAAGGGGTTGAAGAAGAGAATCAGTAGGAATGAAGCACACAAGCAATTACAATCTGAAATTTCCTATTCAGCAGCTTTAGCACCTGTTGCATACCCCAAACTCATGAGGGTGAATCAAGTTTTACAAAACCATTTATGGAGAAAAAATGCTTTGGTGTACTGTTCATTTGCTCCAGTTGTGATTCCTGTTGGTGCAATTTATTTTGGGTATAGATATGTGGTTGACAAGTACAACTTTCTGTTTGTATATCGAGTTCGAGGTTTTCCTGCTGGCAATGATGTAAGCCTTGGAAATACCATCAACAAGGTTATGGGTATGACTGCAGAGGCACAGTTTCATGTACTGGCTGTTGATGACAGTCTAATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTATCAAGTGACTGCAGTGGATTCTGGTAGCAAGGCTTTGAAATTTCTGGGTTTGCAAGAGGATGAGAAGATGAATGTGGAAACTCCCATTGTTGCTGCAGAAACCCAACAGGATGTAGAAGTAAACTTAATCATCACAGATTACTGTATGCCAGGAATGACAGGCTATGATCTCATGAGAAAAATCAAGGAATCTAAATCTCTTAAAGACATACCTGTTGTGATAATGTCCTCAGAGAATGAACCATCAAGGATCAACAGGTGCTTAGAAGAAGGAGCTGAGGAATTTTTTCTGAAACCAGTTCAACAATCAGATGTAAACAGGCTGAAGCCTCATTTGTTTAGATCAAAAATTAAGGAAGAAGATCAATCCATTGGTAGTAAAATGAAAGACTTGGAAGAAAGCCATTCTCATGATAAATCTAGGCCAGAAGTATAG 951 0.3922 MFEFAKQVSKLCLMQKSPKSHVDATTFPASELIPQTKGLKKRISRNEAHKQLQSEISYSAALAPVAYPKLMRVNQVLQNHLWRKNALVYCSFAPVVIPVGAIYFGYRYVVDKYNFLFVYRVRGFPAGNDVSLGNTINKVMGMTAEAQFHVLAVDDSLIDRMLIERLLKTSSYQVTAVDSGSKALKFLGLQEDEKMNVETPIVAAETQQDVEVNLIITDYCMPGMTGYDLMRKIKESKSLKDIPVVIMSSENEPSRINRCLEEGAEEFFLKPVQQSDVNRLKPHLFRSKIKEEDQSIGSKMKDLEESHSHDKSRPEV 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1542 316 CDD REC_typeA_ARR 150 280 - -
Dere08g1542 316 PANTHER TWO-COMPONENT RESPONSE REGULATOR 148 300 IPR045279 GO:0009736
Dere08g1542 316 ProSiteProfiles Response regulatory domain profile. 149 285 IPR001789 GO:0000160
Dere08g1542 316 SMART REC_2 148 284 IPR001789 GO:0000160
Dere08g1542 316 Gene3D - 149 312 - -
Dere08g1542 316 MobiDBLite consensus disorder prediction 291 316 - -
Dere08g1542 316 Pfam Response regulator receiver domain 150 276 IPR001789 GO:0000160
Dere08g1542 316 SUPERFAMILY CheY-like 148 279 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1542 Dere-ChrDere08 20378739 20385454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1542 140 292 Response Regulator Gene Family AT3G57040 68.182 6.12e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere08g1542 Response_reg 1e-19 CL0304