Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1541 ATGGATGATTCCTTCCCTGACCACAAGCTCTGCGGTTTCCTATTTGCCGTTCTCACGGTGACTCCATCGCAACCTGACCCCTGTGCCAGCCTAGGTTTCAAAGAGCGCTGCGACATCTTCGGCGACGGTTCTGATGCCGTCGGATTTCGGTCCGAGAACCGCATCGTTTTACTTCCGGTGGACTCGGCGACGAAGCCCAATGAGAGCGGAATCATGTCTCCTTCTGATTCAGAGCAATGCAAAGTGGTGGGGTCGGATTCTGGGCTTGGTTCCGGTTGTAATGGGGAGGTTACGCCTCAGAGTTTGCGACAGAAGGGCACTGTAAGAAAAAATGGTGTGGTGGCGGATAGTGGGAGCTTGAGGAAGAAGAGGATGACGAAGATTGGGATGGTGAATGGGAGTGTAAGTGTGGTTCACCAGCTTCACGCCCTGGTTAGCCGCAAGTGCTTGAAGATTGATGCCCGAGTGATTTTGGTTGAGCTTGGAGGTTGCAGGGAGGCGAGAGCTGTGATACTGGTCGATGTGTACCTTCCAGTTGCATTGTGGAGTGGGTGGCAGTTTCCAAGATCCGGGTCCACTGCTGGTGCTCTTTTTCGGCATTTGAGGTGTGATTGGGATGAGAGAAGATCAATGCTTTCTTGTTCCGACTATTGTAGGAATATTCAGGGGGTGAGTGAGAGCATTTGGAACCTTTGTGACTGTCACGTACTTGGCTGCAAACTTCATTACAATGCGAGTGATTCTTCAAATAACAGCCTATTTGAACTTCATGAAATATTTAAGAGGGTACCTGGTGTAGGAAAACAGCAGAATCTTGATAGTTCCAGGATAATACCCTTGGATGACTCTTGTAGGATTTGCGAGTTATCTGATGACATTTTATGTAAAATTCTAGCTTCCCTTGACCCAATGGACCTTGCTAGGGTTTCTGCAACTTGTCGCCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAATTGAAGCTGTTTCCTCACCAGCAGGCAGCAGTTCAGTGGATGTTGCATCGTGAGCGAAATGCTAAACGCCTGGCACATCCATTGTATGTTTCTTTCTCAACTGAGGATGGCTTTATTTTCCATTTAAGTACTGTATCTGGTGAAATAGTCATTGGGGAAGCTCCCACCATCAAAGATTTTTGTGGCGGAATGTTCTGTGATGAGCCTGGTTTGGGTAAGACTGTAACAGCTCTTTCTCTTATAATGAAGACACAAGGTACATTGGCAAATCCGCCAGATGGGGCAAAGGTTGTTTGGTGTCATCATAATGGTAATCAGAAATTTGGCTATTATGATATTGTTGGTAGTTATGTCATTGACAGAAGTAATTTGGGGAAGAGGGACATTTGCCAGGATGCTTGTAGGAATAATGATAACCATGATTACTCCCCAAAAAGAGCCAGATTGATGGTTCCTGCTGAGAAAATGACTGGAATTAATAATGTATGTTCTGGGGAAGAAAAAAGATCACCTGTGGGCACATGCTCTGAGCAGTCAATGCCTGCAATTCGATGCTCTTGGAACTTGAGTTGCATAAAGAAAAATCTATGTTTCACCTATGAAGAGGAAGCTGGGCTTTCCGAGGGAAGAAAAGTTAGTGGAAACTCTTCTAAACTAAAGCATGCATCTGATGTTGAATCACATGTTTCTCAAAATAAGCCAGTTGATGCTTCATATGGACATGAAAAGGCTTACAGGAGGGTTGAGAAGCCTACAGGGGATTTTTTTGAGGACAATGATACCTGGATTCAGTGTGATGCTTGTCAGAAGTGGCGAAAGCTTGCAGATACCAGTACAGCTAATACTAATGCAGCGTGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGTGCCCCAGAACAGTCTTGTCATAATAGCTGCCAAATAACTTACTTACCAGGATTTCATTTGAAAGGTAGTGCTGGGGGTGAGAAGCGAAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCATTACACATTGATAAATTCTGAGACAAAGAAAGCCTTGATGTGGCTGGCTAGACTTTCTCCTGACAAGCTTGCTGAAATGGAAATAAGTGGCATACGAGGTCCTATTTTAAGCACCAGCACTGCATCTAGTGGATATCTCAATCCATACCACAAAATATTTCAAGCATTCGGCCTCATTAAGAGACTAGAGAAAGGAGTAAATAAGTGGTACTACCCACAAAATCTTAATAATTTGGCTTTTGATGTGGCTGCCCTTGGCTTGGCTTTGCGTGAGCCATTAGATTCTATTAGGCTATACTTGTCAAGGGCAACCCTGGTAGTTGTTCCTGCTAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTTAAAGTTAGTCAACTGCGAGTTTATGTTTGGACTGATACTTGGAAGTGGAAACCATCTGTACACAATCTGGCCTGGAATTATGATGTTGTCATTACTACATTTAGTCGTCTGAGTGCAGAGTGGAGCCCACGTAAGAGAAGTGTTTTGATGCAAGTACATTGGCTAAGGATAATGTTAGATGAAGGGCACACTCTTGGCTCAAGCCTCAGCTTAACAAACAAGTTGCAAATGGCTATTTCACTGACGGCTTCAAATCGCTGGATACTAACAGGAACACCAACACCTAACACTCCTAAAAGCCAACTGTCACATCTACAAACATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTAAATCAAAAGTCATGGGAGGCTGGCATTCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTGCATCTACTTCATAATTGCATGATCAGTGCAAGGAAGATAGACTTACGTAATATTCCACCATGTATCAAGAAAGCTATTTTTCTGGATTTTACGGAGGAGCATGCCAAAAGTTACAATGAATTGATACTAACTGTTCGTCGTAATATATTAATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTAGGAGTGCGACTATAAAAAATGTCAGGCTCTCATGTTGTGTTGCTGGACATATTAAAATTACACATGCTGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAAGTGGTCTGGATCCTGATTCGGGGGAGTATGCCTCCATAAGATATAATCTCCTTTATGGTGGCCGCTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTTTTATTACACCATGTCGTCATCTGTTGTGCCTTGACTGTGTTTCTTTAGATAGTATGAGGTGTACTTATCCTGGTTGCACTAAATTATATGAGATGCAGAGTCCTGATACACTGGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTTCAACCTTCATATAAACAGGATAATTGGGATCCTGACTGGCAATCAACATCTAGTAGCAAGGTTTCCTATCTAGTCCAGAGATTGAAAGCTTTACAAGGAGCCAATAAAGAGGTGGCTAACTATATGGACTGCAATAATCAGATGCGTGCTGAGAGTAGTTGCCCTTTGCTGATGAGTGATGTGAAATCATCATTCTGGCAATGCCCTTTAAGCACTGAGCCTGATAATATCCCTGAGAAAGTCTTGATATTTTCTCAATTTCTTGAGCATATACATGTCATCGAACAGCAGTTGACTATTGCTGGTATTAAATATGCCGGGATGTATAGTCCAATGCATTCGAGCAACAAGAAGAAGTCACTGGCCATTTTCCAGCATGATTCCAGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCGTTAGGTCTGGACTTGAGTTTTGTTACGCATGTTTTTTTAATGGAACCAATCTGGGACAGAAGCATGGAGGAACAGGTAATTAGTCGTGCTCATCGCATGGGTGCTCGTCGTCCCATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTGCAGGATGTCGATAAAAGTAGAAAGTTACCAACTAAAAGTGTTGTCCAATCTGAAGATGAAGGGGGACGAGGACGTTCCTTGCATGATTTTGCAGAAAACAGTTATCTACTTAAACTTAGATTTGTGAACACCAATCCTAGTACTGTAGAAGGTTTGTTCAGAGTAATTTTGCTCTTCCATAACTGTGTTCACATTGGAAACATCAGTCATTTTGCATGTGGGAACTTAATGGCAAATGTTCCATTGACTTCTTGCCTTATAAAATACAGAGGTTTAGCAGTGAAATAA 4284 0.4274 MDDSFPDHKLCGFLFAVLTVTPSQPDPCASLGFKERCDIFGDGSDAVGFRSENRIVLLPVDSATKPNESGIMSPSDSEQCKVVGSDSGLGSGCNGEVTPQSLRQKGTVRKNGVVADSGSLRKKRMTKIGMVNGSVSVVHQLHALVSRKCLKIDARVILVELGGCREARAVILVDVYLPVALWSGWQFPRSGSTAGALFRHLRCDWDERRSMLSCSDYCRNIQGVSESIWNLCDCHVLGCKLHYNASDSSNNSLFELHEIFKRVPGVGKQQNLDSSRIIPLDDSCRICELSDDILCKILASLDPMDLARVSATCRHLRSLAASVMPCTKLKLFPHQQAAVQWMLHRERNAKRLAHPLYVSFSTEDGFIFHLSTVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTALSLIMKTQGTLANPPDGAKVVWCHHNGNQKFGYYDIVGSYVIDRSNLGKRDICQDACRNNDNHDYSPKRARLMVPAEKMTGINNVCSGEEKRSPVGTCSEQSMPAIRCSWNLSCIKKNLCFTYEEEAGLSEGRKVSGNSSKLKHASDVESHVSQNKPVDASYGHEKAYRRVEKPTGDFFEDNDTWIQCDACQKWRKLADTSTANTNAAWFCSMNTDPLYQSCSAPEQSCHNSCQITYLPGFHLKGSAGGEKRNVSFFTGVLKEHYTLINSETKKALMWLARLSPDKLAEMEISGIRGPILSTSTASSGYLNPYHKIFQAFGLIKRLEKGVNKWYYPQNLNNLAFDVAALGLALREPLDSIRLYLSRATLVVVPANLVDHWKTQIEKHVKVSQLRVYVWTDTWKWKPSVHNLAWNYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIMLDEGHTLGSSLSLTNKLQMAISLTASNRWILTGTPTPNTPKSQLSHLQTLLRFLHEEAYGLNQKSWEAGILKPFEAEMEEGRSRLLHLLHNCMISARKIDLRNIPPCIKKAIFLDFTEEHAKSYNELILTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKITHAGEDIQETMDMLVESGLDPDSGEYASIRYNLLYGGRCVRCKEWCRLPFITPCRHLLCLDCVSLDSMRCTYPGCTKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQGANKEVANYMDCNNQMRAESSCPLLMSDVKSSFWQCPLSTEPDNIPEKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSNKKKSLAIFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGARRPIHVETLAMRGTIEEQMLEFLQDVDKSRKLPTKSVVQSEDEGGRGRSLHDFAENSYLLKLRFVNTNPSTVEGLFRVILLFHNCVHIGNISHFACGNLMANVPLTSCLIKYRGLAVK 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1541 1427 Gene3D - 584 637 - -
Dere08g1541 1427 SMART ultradead3 327 915 IPR014001 -
Dere08g1541 1427 CDD F-box_SF 288 320 - -
Dere08g1541 1427 ProSiteProfiles F-box domain profile. 283 335 IPR001810 GO:0005515
Dere08g1541 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 412 IPR027417 -
Dere08g1541 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 943 IPR027417 -
Dere08g1541 1427 ProSiteProfiles Zinc finger CW-type profile. 584 635 IPR011124 GO:0008270
Dere08g1541 1427 Pfam F-box domain 287 323 IPR001810 GO:0005515
Dere08g1541 1427 MobiDBLite consensus disorder prediction 538 559 - -
Dere08g1541 1427 Pfam CW-type Zinc Finger 589 632 IPR011124 GO:0008270
Dere08g1541 1427 MobiDBLite consensus disorder prediction 538 555 - -
Dere08g1541 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1336 IPR027417 -
Dere08g1541 1427 Gene3D - 754 948 IPR038718 -
Dere08g1541 1427 Gene3D - 1111 1371 IPR027417 -
Dere08g1541 1427 SMART fbox_2 289 329 IPR001810 GO:0005515
Dere08g1541 1427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1203 1354 IPR001650 -
Dere08g1541 1427 SMART helicmild6 1226 1308 IPR001650 -
Dere08g1541 1427 Pfam Helicase conserved C-terminal domain 1210 1308 IPR001650 -
Dere08g1541 1427 CDD SF2_C_SNF 1213 1318 - -
Dere08g1541 1427 CDD RING-HC 1066 1092 - -
Dere08g1541 1427 ProSitePatterns Zinc finger RING-type signature. 1082 1091 IPR017907 -
Dere08g1541 1427 SUPERFAMILY F-box domain 272 322 IPR036047 GO:0005515
Dere08g1541 1427 CDD DEXDc_SHPRH-like 759 945 - -
Dere08g1541 1427 Gene3D - 288 323 - -
Dere08g1541 1427 Pfam SNF2-related domain 334 1002 IPR000330 GO:0005524|GO:0140658
Dere08g1541 1427 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 129 1334 - -
Dere08g1541 1427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 737 904 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1541 772 1328 RAD5 or RAD16-like Gene Family AT5G22750 25.253 2.76e-37 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere08g1541 SNF2_N 9.5e-95 CL0023