Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1535 ATGTCTCTACACCAGAAGAATCCCGAGCACAATGGTGTTCCAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAAACACAAAATTTACAAGCCCAAAGGAATCAATGCATGCCTTCCACCGACCCTCAAAAAAAGCTACATAAGCTGATGCAACAAGCTGGGAACAAGTATTGCGCTGACTGTGGGTCTCCAGAGCCAAAATGGGTATCTTCAACTATTGGAGCATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTACATGTATCAAAGGTTCTATCACTGAAGCTAGATCAATGGACAGATGAACAAGTTGAGGCACTGGCAAAGTTAGGTGGAAATACAGTGGTAAATGATAAGTATGAAGCTTGCATCCCATGTAATATAAAAAAACCAAAGCCTACTTCCTCCATTGAGGAGCGTGCTGATTTTATCAGGAGAAAATATGAGTTGCAACAGTTTATAGAGTCTGATGAACAATTGTCCTGCCCCTTTCCACCATCACATAGCAGTTCCTCAGGCATCATTTCTCCGCCTGACAAGAAACATATTAATAAACAAGCAACCAAAAATCGTATTGGGAATGCATTTCGTAACAGCTGGGGAAGAAAAGAGCCTGACAATAATAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATAAAGGTTAATGTGGTTAAAGGCACTAACCTGGTCATCCGAGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTCTGGGTCACCAATCAGTAAAGACACGAGTCATAAAGAATAATTTGAATCCTGTTTGGAATGAGAGCCTAATGCTGTCAATACCGGATAACATTCCTCCTCTTAAAGTGCTTGTCTATGACAAAGATACATTCTCAACTGATGATTTCATGGGTGAGGCTGAAATAGACATCCAACCCCTACTTGCAGCTGCAAAGGCCTATGAGAACTCCACAATCGGTGAGTCCATGCAGATGGGAAAATGGGTGGCAAGCATGGACAACACCCTTGTAAAAGACGGTGTCATCTCCCTCGAAGACGGGAGGATCAGACAGCAAATATCGGTAAAGCTGCAAAACGTCGAGAGAGGCGAGCTGGATGTTGAGCTTGAGTGTCTTCCTCTCACTCAGTAG 1164 0.4278 MSLHQKNPEHNGVPGSGCCLYDLLCAETQNLQAQRNQCMPSTDPQKKLHKLMQQAGNKYCADCGSPEPKWVSSTIGAFICIKCSGIHRSLGVHVSKVLSLKLDQWTDEQVEALAKLGGNTVVNDKYEACIPCNIKKPKPTSSIEERADFIRRKYELQQFIESDEQLSCPFPPSHSSSSGIISPPDKKHINKQATKNRIGNAFRNSWGRKEPDNNKASKKSNSLAGMVEFVGLIKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPDNIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYENSTIGESMQMGKWVASMDNTLVKDGVISLEDGRIRQQISVKLQNVERGELDVELECLPLTQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1535 387 CDD C2_ArfGAP 230 374 - -
Dere08g1535 387 Pfam Putative GTPase activating protein for Arf 46 162 IPR001164 GO:0005096
Dere08g1535 387 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 228 322 IPR035892 -
Dere08g1535 387 CDD ArfGap 48 154 - -
Dere08g1535 387 PRINTS HIV Rev interacting protein signature 57 76 IPR001164 GO:0005096
Dere08g1535 387 PRINTS HIV Rev interacting protein signature 97 118 IPR001164 GO:0005096
Dere08g1535 387 PRINTS HIV Rev interacting protein signature 76 93 IPR001164 GO:0005096
Dere08g1535 387 MobiDBLite consensus disorder prediction 168 183 - -
Dere08g1535 387 ProSiteProfiles ARF GTPase-activating proteins domain profile. 45 167 IPR001164 GO:0005096
Dere08g1535 387 SMART C2_3c 232 327 IPR000008 -
Dere08g1535 387 SMART arf_gap_3 46 167 IPR001164 GO:0005096
Dere08g1535 387 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 229 387 - -
Dere08g1535 387 MobiDBLite consensus disorder prediction 200 219 - -
Dere08g1535 387 ProSiteProfiles C2 domain profile. 214 329 IPR000008 -
Dere08g1535 387 Gene3D Arf GTPase activating protein 26 167 IPR038508 -
Dere08g1535 387 MobiDBLite consensus disorder prediction 168 194 - -
Dere08g1535 387 SUPERFAMILY ArfGap/RecO-like zinc finger 45 160 IPR037278 -
Dere08g1535 387 Pfam C2 domain 232 320 IPR000008 -
Dere08g1535 387 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 387 IPR044518 GO:0005096|GO:0005543
Dere08g1535 387 FunFam stromal membrane-associated protein 1 isoform X1 29 165 - -
Dere08g1535 387 Gene3D C2 domain 230 387 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1535 Dere-ChrDere08 20264543 20271279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1535 45 387 C2H2 Transcription Factor Family AT4G21160 47.230 4.95e-119 347