Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1533 ATGAAAGATTTGTCAAGTGGTAGGGTGCCTCACTTAATTGCTCAAGCTTTGAAGCTGAACGCCTACATAAATCAAGATGTTCTGAACTATTGTAGTTATACAAGTCACTCAGGACACGAACAAAATGCATTTTTGATCAGAAGTCCCAGGCTGGTAATTTCTTGTTATAACATGGCATCTAGTAATCCGTTGTTTGACGATATACGGACCAAATCTGAAGTTGATCCTCCTCCAAATGAAGAGTTGACAGATGTCAGTGAACTTGTGAATGATCCTACACAGCCAGCTCCAAAACCTAATGTGGCTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCAGGTTGCAAACCCAGGGTCCACAACCGGTGCCCCACTTGTAGGCATGAATTAGGCAATATCAGATGTCTGGCACTGGAGAAGGTGGCTGCTTCTTTAGAACTTCCCTGTAAATATCAAGATTTTGGGTGCATGGGCATATATCCATATTACAGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCAGTGTTATTGGTGATATACCTTATTTGGTGGCCCATCTAAAAGATGATCACAAAGTGGACATGCACAATGGTAGCACCTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACTTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTTTGTCTACATTTTGAAGCCTTTCAGCTCGGAATGGCTCCTGTATACATAGCCTTTTTGCGATTCATGGGTGATGATAATGAGGCAAAGAACTACAGCTACAGTCTTGAGGTGGGTGGAAATGGAAGAAAGATGACTTGGCAGGGGGTGCCTCGGAGCATTAGGGACAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAACGGAATATGGCTCTTTTCTTTTCAGGGGGCGACCGGAAGGAGTTGAAGTTACGGGTTACTGGGAGGATTTGGAAAGAACAGTAA 1086 0.4337 MKDLSSGRVPHLIAQALKLNAYINQDVLNYCSYTSHSGHEQNAFLIRSPRLVISCYNMASSNPLFDDIRTKSEVDPPPNEELTDVSELVNDPTQPAPKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQDFGCMGIYPYYSKLKHESQCAYRPYNCPYAGSECSVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1533 361 FunFam E3 ubiquitin-protein ligase SINAT5-like 222 354 - -
Dere08g1533 361 SUPERFAMILY TRAF domain-like 166 358 - -
Dere08g1533 361 FunFam E3 ubiquitin-protein ligase SINAT5-like 71 164 - -
Dere08g1533 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 221 IPR013083 -
Dere08g1533 361 MobiDBLite consensus disorder prediction 68 100 - -
Dere08g1533 361 SUPERFAMILY RING/U-box 105 153 - -
Dere08g1533 361 ProSiteProfiles Zinc finger RING-type profile. 113 149 IPR001841 -
Dere08g1533 361 CDD Sina 227 355 - -
Dere08g1533 361 CDD RING-HC_SIAHs 111 149 - -
Dere08g1533 361 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 94 360 - -
Dere08g1533 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 164 IPR013083 -
Dere08g1533 361 Pfam Seven in absentia protein family 155 354 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere08g1533 361 FunFam E3 ubiquitin-protein ligase SINAT3 165 221 - -
Dere08g1533 361 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 222 354 IPR008974 GO:0005515
Dere08g1533 361 ProSiteProfiles Zinc finger SIAH-type profile. 166 226 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1533 Dere-ChrDere08 20231083 20234618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1533 104 361 C3H Transcription Factor Family AT2G41980 80.233 9.80e-162 453