Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1489 ATGGAAAACGCAACTTCTAGTATTGTCCCCCGACACGAGGACATAGAAATAGATGGCGGAAACAGCAACGACTTGCGTCTGTCGTTGCCGAAAGCATGTGTTCTTCGTCACAATAAATTTAATAGAAAACCCCAAAGCCCTTTAGACCACCTTTCCGGTCTCCCATTCAACTCCAATTCCAATCATTTTGAAGTCTCTGCTGCATATCAATTCTTCGCAATGGAAGCAGGTTCAAGTTCAAGCTCAAGCTCCTCATACCAGTGGCTCACAGACATGAAATGGGAAGCCAGGGGCATATACCTAGCCCGTCTTCTTCCCAACTGTGCCAAGGTCACCGAAGCCGGCGACGTCATGAACGCCGCCACTGGACTCAAGAACATCGCCACTCTGGCCTCCCCCGACGGCGATGCCCTCCAACGTGTCGCCACCTATGTCAACGAGGGCCTCGCTCACCGCATGCTCAAGAACTTTCGCGGCGTCTCCGAGGCGCTCCGTCTGACAAACCGGGTGTCGGCGTCGGAGCTGGTACTCGTCAGAAAGCTGTTCCGAGAGCTGTGTCCGTTCTTGATGTTCTCGTATCTGATATCGAATCAAGCCATCGCTGAAGCCATGAGAGGAGAGCCTGTGATTCATGTCATTGACTTCAATGCTTCCGATCCTGATCAGTGGATCCATCTTCTTCAAGCTTTGAAGGAACAGTATCAAGGGAATAACTATCCCTTGCCCTTTCTTAAGATCACTGGGATTCATGAGAGTAAAGAGGTTTTGGAGCAAACGGGGTTTCGATTGATGGCTGAAGCTGAGAAGTTAAACTTCCCTTTTCACTTCTATCCATTTGCATGCAAATTGGAGGATCTTAACTTCGAGAAGTTGCCTGTGAAGCCTGGAGAGCCTCTTGCTATCGTTTCCATTCTTCAGCTTCATTCTCTTCTCGCCGCTGATGATCAAACTGTCACAAGCAAGATTAATTCTCCTGCAGGGTTGATTGAGAAACTTAGGGTCAAACCGAGTCCTGATTCATCACTTTCCCCTATTTCTCAATGTGCTTCACCTAAGATGGAGTATTTTCTGAATGCCCTCTGGAAACTCATGCCCAGGTTAGTGGTCATTACTGAGCAAGAATCAAATGCCAATGGGCTCACTCTGATGGACAGGCTTGAAAAGGCACTCAACTTCTATGGTGCACTGTTTGATTGCTTGGAAGCTAATGTTCCGAAAGCAAGAGAAGCAGAGAGAATAATAATGGAGAGGATGCTACTGGGTGAAGAAATCAAGAACATTATTGCCTGTGAGGGAGTTGAGAGAAAAGAGAGGCATGAGAAAGCTGAGACGTGGATAAGATGGCTTGAATTGGCTGGGTTTCAAAGGAGACCTATCAGCTATGAGAGGATGTTGCAGGCAACAAGGCCATTGCAAAGCTATGGGCGTGGATACAAGCTTCTAGAGCATAATCAATGTCTGTTTATCTGCTGGAACGATCGACCACTCTATTCTATATCGGCTTGGAAGTTCTAG 1515 0.4746 MENATSSIVPRHEDIEIDGGNSNDLRLSLPKACVLRHNKFNRKPQSPLDHLSGLPFNSNSNHFEVSAAYQFFAMEAGSSSSSSSSYQWLTDMKWEARGIYLARLLPNCAKVTEAGDVMNAATGLKNIATLASPDGDALQRVATYVNEGLAHRMLKNFRGVSEALRLTNRVSASELVLVRKLFRELCPFLMFSYLISNQAIAEAMRGEPVIHVIDFNASDPDQWIHLLQALKEQYQGNNYPLPFLKITGIHESKEVLEQTGFRLMAEAEKLNFPFHFYPFACKLEDLNFEKLPVKPGEPLAIVSILQLHSLLAADDQTVTSKINSPAGLIEKLRVKPSPDSSLSPISQCASPKMEYFLNALWKLMPRLVVITEQESNANGLTLMDRLEKALNFYGALFDCLEANVPKAREAERIIMERMLLGEEIKNIIACEGVERKERHEKAETWIRWLELAGFQRRPISYERMLQATRPLQSYGRGYKLLEHNQCLFICWNDRPLYSISAWKF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1489 504 MobiDBLite consensus disorder prediction 1 21 - -
Dere08g1489 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 87 498 IPR005202 -
Dere08g1489 504 ProSiteProfiles GRAS family profile. 92 503 IPR005202 -
Dere08g1489 504 Pfam GRAS domain family 102 503 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1489 Dere-ChrDere08 19804165 19807726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1489 81 503 GRAS Transcription Factor Family AT1G50420 47.020 5.48e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere08g1489 GRAS 1.5e-109 CL0063