Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1488 ATGAAAGAGGAAGAAAGGGGCTTATACCTAGCTCGTCTCCTGAAGACTTGTGCTAAGTATACAGAAAGAAACGACGTAATGAATGCATGCACTGGGCTTAAGAATATTGCTACCCTTTCCTCCCCTAATGGTGATGCATTGCAGAGGGTAGCTACTTATTTCAACAAGGGGCTTGCTTACAGGCTGGTTAAGAATATTCACGGTGTGCCTGAAGCCCTGCATTTGACAAATCCCTTATCAACCTTAGAACAACAATATGCCAGAAAGTTGTTCTGTGAGCTTTGCCCATTCTTGAAGTTTGCTTATATGATCACAAATCAGGCCATTGCTGGTGCTATGGAAAGAGAAAAATTGGTTCATATTATTGATCTCAATGCCTGTGGTCCTGCTCAGTGGATAAATCTTCTTCATACTATGAAAGAACAGTGGCAAGGAAACCCGTTACCCATTCTGAAGATCACTGGGATTCATGAGAAGAAAGAGGTTTTGGAACAAACGGGGCATCGTTTAATAGAAGCAGCTAAGAATTTGAACTTCCCTTTCCACTTCTATCCCATTGCTAGCAAATTGGAGAATGTTTGCCTTGAGAATTTGCCTGTGAAGCCAGGAGAGCCCCTTGCTATAAGTTCTATTCTTCAGTTACATTCTCTTCTAGCGATGGATGATCAAATAAGTCCTGATTCAGTCTTGTCACTCATTTCTCCACAATGTTCTTCACCTAAGATAGATTGCTTTCTAAATGGCCTCTGGAAACTCCAACCTAGATTGATGGTTATTACAGAACAGGAATCATGTACCAATTTGTCTAATTTGACAGACAGGCTTGAAAAGGCACTGATCTTTTATGCTACTCTGTTTGATTGCTTGGAAGCTAATGTTCCAGAAGCAAGAGCAGTAGACAGAATCATGCTAGAGAGGATGTTTCTTGGGGAGGAGATAAAGAACATTATTGCTTGTGAGGGAGCTGAGAGAAAAGAGAGGCATGAGAGGGCTGCGAAATGGATCCCACGGCTTGAATTGGCTGGGTTCATGAGGGTGCCCATCAGCTATGAGAGGATGCTACAGGAAACGAGGCCATTGCAGAGCTATGGGCGTGGATACAAGCTGCTAGAGGACAATCAATGTCTGTTTATATGCGGGAAGGATCAACCACTCTATTCTATATCGGCCTGGAGGTTCTAA 1182 0.4281 MKEEERGLYLARLLKTCAKYTERNDVMNACTGLKNIATLSSPNGDALQRVATYFNKGLAYRLVKNIHGVPEALHLTNPLSTLEQQYARKLFCELCPFLKFAYMITNQAIAGAMEREKLVHIIDLNACGPAQWINLLHTMKEQWQGNPLPILKITGIHEKKEVLEQTGHRLIEAAKNLNFPFHFYPIASKLENVCLENLPVKPGEPLAISSILQLHSLLAMDDQISPDSVLSLISPQCSSPKIDCFLNGLWKLQPRLMVITEQESCTNLSNLTDRLEKALIFYATLFDCLEANVPEARAVDRIMLERMFLGEEIKNIIACEGAERKERHERAAKWIPRLELAGFMRVPISYERMLQETRPLQSYGRGYKLLEDNQCLFICGKDQPLYSISAWRF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1488 393 Pfam GRAS domain family 11 392 IPR005202 -
Dere08g1488 393 ProSiteProfiles GRAS family profile. 1 392 IPR005202 -
Dere08g1488 393 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 370 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1488 Dere-ChrDere08 19799022 19800203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1488 1 392 GRAS Transcription Factor Family AT1G50420 44.977 8.81e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere08g1488 GRAS 4.7e-104 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1488 08 19799022 19800203 Dere08g1488 08 19799022 19800203 ECH