Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1487 ATGGGAAGAAAGGACACTATATACATGTCAGAAATTCCCATATTCCTCTGTACTTCCGAACCCAAACGACAATATTACAAGCAAACAGTGGTGAGAAAAACAACCTCTTCCATTGTCGGCATCTTGGGAAGCCCTCCGATGCAAAGAGCTTCAATTTTTTCAGCAGACTCAGTCTTGTTCTATAAAACTCCACACCACAAACACTGTACAGCTTTGCATTTGCTTTCAGGAGGCTTTGGGAAGGACCTCTTGGTTCGGCTTCTCTGGGAAATTTCTGAAGTTGGTGCTATACTTGATCACTTGTGCAAGAGGATCAACTTATGGACTCTGTGGCTCAGAGAGCTGAGATGGGACAATGGAGGCTTAAATCCAATCACCCTCCTTCTTGACTGTGCAAAATGTGTAGCGTCTGGAAGCATAAAAAATGCAGATATAGGCCTAGAGTACATCTCCCACCTAGCCTCTCCTGATGGTGATGCAGTTCAGAGAATGGTCACTTATTTCAGTGAAGCCCTTGCTTACAGAATAGTCAAAAACTTACCAGGTGTCTATAAAGCCCTCAATTCCTCAAAAACCTCACCACCATCAGAACAAATCTTGGTCCAAAAGTACTTCTTTGAGCTCTGTCCCTTCTTGAAACTAGCTTACTTGACCACAAACCAAGCCATAGTTGAAGCCATGGAAGGTGAAAAACTAGTTCACATCATAGACCTTCATTCTTCTGAGCCTGCCCAATGGATTGACCTTCTAATGACTCTAAAGAAACGCCCAGAAGGGCCTCCTCATTTGAAAATCACAGGGATTCATGAGAAGAAAGAGGTGTTAGACCAAATGGGGTTTCATTTGACAAGTGAAGCAGGAAAATTGGACTTCCCTTTACAGTTCTATCCAGTTGTGAGCAAATTGGAAGATCTTGATGTAGAAAGCTTGTCTGTCAAGTCAGGAGAAGCAGTTGCCATAAGTTCTGTGCTTCAGCTTCATTCTCTTCTTGCAAGTGATGATGAAATGGCTGCGAGGAACTCACCAGCCGCACTGATAAATCTGCAGCGAGTTGTCCAGCAGCACATGAGCCAGAGGACTTTTGCAGAGTGGCTAGAGAGGGACAGGAGCAATGCTTATATTTCAAGTCCTGACTCAGCACTTTCACCTCTTTCTCTAAGTGCTTCTCCTAAAATGGGGATATTTTTGAACTCCCTAAGGAAACTCCAGCCCAAATTGATGGTGATTACAGAGCAAGAATCAAACCTTAATGGGTCTAATCTATTGGAGAGGATTGAGAAGGCACTGTACTTCTACTGTCCATTGTTTGATTGCTTGGAATCTACTGTTTCAAGGACTTCTTTGGAGAGACAGAAGCTTGAGAGAGAGTTACTTGGGGAGCAGATAAAGAGGATTATTGCGTGTGAGGGATTTGAGAGGAAGGAAAGGTATGAGAAGCTTGATAAGTGGATTCCAAGGCTTGAAATGACTGGATTTCGGAGGGTACCCTTGAGCTACTATGGGATGTTGCAGGCAAAGAGGTTATTGCAGAGCTATGGGCATAAGTACAAGATTAGAGAAGAGAGTGACTGTTTGCTTATATGTTGGAGTGATAGGCCACTTTTTTCCGTATCAGCATGGAGTTTTAGGGGATGA 1635 0.4343 MGRKDTIYMSEIPIFLCTSEPKRQYYKQTVVRKTTSSIVGILGSPPMQRASIFSADSVLFYKTPHHKHCTALHLLSGGFGKDLLVRLLWEISEVGAILDHLCKRINLWTLWLRELRWDNGGLNPITLLLDCAKCVASGSIKNADIGLEYISHLASPDGDAVQRMVTYFSEALAYRIVKNLPGVYKALNSSKTSPPSEQILVQKYFFELCPFLKLAYLTTNQAIVEAMEGEKLVHIIDLHSSEPAQWIDLLMTLKKRPEGPPHLKITGIHEKKEVLDQMGFHLTSEAGKLDFPLQFYPVVSKLEDLDVESLSVKSGEAVAISSVLQLHSLLASDDEMAARNSPAALINLQRVVQQHMSQRTFAEWLERDRSNAYISSPDSALSPLSLSASPKMGIFLNSLRKLQPKLMVITEQESNLNGSNLLERIEKALYFYCPLFDCLESTVSRTSLERQKLERELLGEQIKRIIACEGFERKERYEKLDKWIPRLEMTGFRRVPLSYYGMLQAKRLLQSYGHKYKIREESDCLLICWSDRPLFSVSAWSFRG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1487 544 Coils Coil 436 456 - -
Dere08g1487 544 Pfam GRAS domain family 126 540 IPR005202 -
Dere08g1487 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 537 IPR005202 -
Dere08g1487 544 ProSiteProfiles GRAS family profile. 115 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1487 Dere-ChrDere08 19781905 19784422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1487 112 543 GRAS Transcription Factor Family AT1G50420 55.982 1.26e-165 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere08g1487 GRAS 2.5e-121 CL0063