Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1469 ATGGAGCAGTACCTCAGAGAAAACTTCGTTGTCTCGCCCAAGCGGCCGTCGGAGGCGGCACTCCGCCGCTGGAGATCCGCCGTCTCCGTCGTCAAGAATCCCCGCCGCCGTTTTCGCATGGTTGCCGATCTCGCCAAGCGCGCCGAGGCCGAAAAGAATCGGAAGAAACTCCAGGAAAAAATTCGGGTAGCTCTCTATGTGCAAAAGGCAGCATTACAGTTCATTAACGCTGGGCAGCGTGGTGCGCCCATGCTCTCCAAAGAGGTTAAAGAATCAGGTTTTGGAATTGAACCCGACGAATTAGCTTCCATTTGTCGATCTCATGATAGCAAAGGCTTAGAACATTATAGAGGAGTAGCAGGATTGGCAAAAGCAGTTAATGTGTCGTTGAAAGACGGTGTTAGCTCACGCGATGTTCCTCATAGACAAAATATCTTTGGTTTTAACCGCTTTGCTGAGAAGCCCTCAAGAGGTTTTTGGATGTACGTTTGGGATGCAATGCAAGACTTAACTCTTATTATCCTCATGGTATGTGCTCTAGTTTCAATAGGTGTTGGAATCCCAACTGAAGGTTGGCCAAAAGGTGTATATGATGGAGTGGGAATCACACTCTCTATTCTTTTAGTAGTTTACGTCACTTCAGTTAGTGATTATAAACAGTCCTTGCAATTTAAAGATTTGGAAAATGAGAAGAAAAATGTTATCATACAAGTCACTAGAGATGGGAACAGACAAAAGATTTCAATATATGAATTAGTGGTAGGAGATATAGTTCATTTGTCCATTGGAGACGTAGTTCCTGCAGATGGGTTATTCATATCAGGTTATAGCTTATTAATTGATGAATCAACCTTATCAGGCGAGAGTGAGGCAGTGAATGTAGACCAACACAAGCCTTTTCTTCTAGCTGGGACCAAAGTACAAGATGGGTCTGCTAAGATGCTAGTGACTTCTGTTGGTATGAGGACTGAATGGGGAAGATTGATGGATACTCTGAACGAAGTGGGAGATGATGAGACACCGTTGCAGGTCAAATTGAATGGGGTGGCTACCATTATTGGAAAGATTGGCTTGGGTTTTGCCCTGCTGACGTTCTTGGTTCTGACTGGCAGATTTTTAGTGCATAAAATTGTTCATCATAAAATCACTGATTGGTCTTTACACGATGCATCTAAGCTTCTCAATTTCTTTGCGACTGCTGTAATTATAATAGTGGTGGCAGTTCCAGAGGGACTTCCTCTGGCAGTGACGCTAAGCCTTGCCTTTGCAATGAAAAAATTGATGAACGATAAGGCACTTGTCAGGCACCTCTCTGCATGCGAGACGATGGGCTCAGCTGGTTGTATTTGTACAGACAAAACAGGGACTTTGACAACAAATCATATGGTTGTAGACAAAATATGGATTTGTGACCAAACCAAGAAAATTATAAGCAACGACAGTGAGAACGTGTTAAAGTCGTCGATTTCTGAACAAATATTTGACCTCTTCTTGCAATCTATATTTCAGAATACTGGCTCAGAGGTAGTCAAAGGTGAAAATGGAAAGAATAAGGTCATGGGTACACCAACAGAGAAAGCATTACTGGAATTTGGCTTGCTTTTTGGAGGTGATTCTATGGCTTATAATGATAAGTATAAGATAGTGAAGATTGAACCATTCAATTCAATCCGAAAAAGGATGTCGGTGCTCGTGGCTCTTCCTGGAGTTGCCAATAAGTCTCGAGCATTTTGTAAAGGAGCATCAGAAATAGTTCTGGAAATGTGCGATAAAGTTGTAAATGCAAATGGTCAAGTAGTCCGCCTGAATGAAGAACAAAGAATGAACATCACAAAAGTTATCAATGATTTTGCTTCTGAAGCTCTGAGAACTCTCTCCATCGCCTTTAAGGATATCGAAGGAGCTTCTAATGGTGACAGTATTCCTGAGGATAATTTTACATTGTTAGCCATTATTGGGATCAAGGATCCAGTGAGGCCAGGAGTAAAAGAAGCTGTAAAGACTTGTTTAGCAGCTGGGATTTCTGTGAAGATGGTAACTGGTGATAACATCATCACTGCTAAAGCAATAGCTAGAGAATGCGGCATCTTGACAGATGGATTGGCTATCGAAGGGCCAGATTTTCGCAAGAAGACCCAGCAGGAGATGGAGGAGATAATACCAAAAATACAGGTAATGGCTCGCTCTTTGCCCCTGGACAAGCACACCTTAGTGACGCATTTGAGGAAAGACTTAAACGAAGTTGTTGCAGTAACTGGTGATGGGACAAACGATGCTCCAGCATTGCGTGAAGCGGATATTGGACTTGCTATGGGCATAGCAGGAACAGAGGTTGCAAAAGAAAATGCAGATGTCATTGTAATGGATGATAACTTTGCAACCATAGTGAAAGTTGCCCGATGGGGCCGTTCTGTTTACATCAATGTTCAGAAGTTCGTTCAGTTCCAATTAACAGTTAATGTTGTGGCTCTCGTCCTCAATTTCGTTTCCGCATGCGTGTCAGGCTCTGCTCCTCTTACCGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTTGGTGCTTTGGCTCTAGCTACAGAACCTCCCGATGACGGGTTGATGACAAGGCCACCTACTGGAAGGAATGTGAAATTCATCACCCGGGTCATGTGGAGGAATATAATTGGTCAAAGCATCTATCAAATAGTTGTCCTTTTGGTTCTTTCATTTCGCGGTGAACAGATTTTGAAGCTTAATGGTCCTGATGCCATCTCTGTTCTTAATACTTTCATATTCAACACCTTTGTCTTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGATCAATGTTTTCCGAGGCATGTTCAGCAACTGGATCTTCCTAGGGGTCATGGCCTCGACGATATGTTTCCAAACCATAATAGTTGAATTTCTGGGTGCTTTTGCCCAAACAGTGCCACTGAGCTGGGACTTGTGGCTAGCCAGCGTCCTGATCGGTGCAGCGAGTTTACCCATAGCTGTTGTCCTCAAATGCATTCCCGTTCCAGTGGCTCGTTACGTCGCCTATCACCATCATCACGATTACGAGCCCCTCCCGAGTGGTCCAGAGCTGGCATGA 3114 0.4367 MEQYLRENFVVSPKRPSEAALRRWRSAVSVVKNPRRRFRMVADLAKRAEAEKNRKKLQEKIRVALYVQKAALQFINAGQRGAPMLSKEVKESGFGIEPDELASICRSHDSKGLEHYRGVAGLAKAVNVSLKDGVSSRDVPHRQNIFGFNRFAEKPSRGFWMYVWDAMQDLTLIILMVCALVSIGVGIPTEGWPKGVYDGVGITLSILLVVYVTSVSDYKQSLQFKDLENEKKNVIIQVTRDGNRQKISIYELVVGDIVHLSIGDVVPADGLFISGYSLLIDESTLSGESEAVNVDQHKPFLLAGTKVQDGSAKMLVTSVGMRTEWGRLMDTLNEVGDDETPLQVKLNGVATIIGKIGLGFALLTFLVLTGRFLVHKIVHHKITDWSLHDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICDQTKKIISNDSENVLKSSISEQIFDLFLQSIFQNTGSEVVKGENGKNKVMGTPTEKALLEFGLLFGGDSMAYNDKYKIVKIEPFNSIRKRMSVLVALPGVANKSRAFCKGASEIVLEMCDKVVNANGQVVRLNEEQRMNITKVINDFASEALRTLSIAFKDIEGASNGDSIPEDNFTLLAIIGIKDPVRPGVKEAVKTCLAAGISVKMVTGDNIITAKAIARECGILTDGLAIEGPDFRKKTQQEMEEIIPKIQVMARSLPLDKHTLVTHLRKDLNEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIVMDDNFATIVKVARWGRSVYINVQKFVQFQLTVNVVALVLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPDDGLMTRPPTGRNVKFITRVMWRNIIGQSIYQIVVLLVLSFRGEQILKLNGPDAISVLNTFIFNTFVFCQVFNEINSRDMEKINVFRGMFSNWIFLGVMASTICFQTIIVEFLGAFAQTVPLSWDLWLASVLIGAASLPIAVVLKCIPVPVARYVAYHHHHDYEPLPSGPELA 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1469 1037 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 Gene3D - 16 76 - -
Dere08g1469 1037 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Dere08g1469 1037 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1013 IPR023298 -
Dere08g1469 1037 Gene3D - 165 1010 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Dere08g1469 1037 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Dere08g1469 1037 Coils Coil 40 60 - -
Dere08g1469 1037 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere08g1469 1037 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 662 IPR023299 GO:0000166
Dere08g1469 1037 FunFam Calcium-transporting ATPase 211 333 - -
Dere08g1469 1037 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Dere08g1469 1037 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Dere08g1469 1037 Gene3D - 447 797 IPR023214 -
Dere08g1469 1037 FunFam Calcium-transporting ATPase 769 1015 - -
Dere08g1469 1037 SFLD C1.7: P-type atpase like 432 804 - -
Dere08g1469 1037 CDD P-type_ATPase_Ca_PMCA-like 141 885 - -
Dere08g1469 1037 FunFam Calcium-transporting ATPase 651 797 - -
Dere08g1469 1037 Gene3D - 133 333 - -
Dere08g1469 1037 Gene3D - 460 657 IPR023299 GO:0000166
Dere08g1469 1037 FunFam Calcium-transporting ATPase 460 657 - -
Dere08g1469 1037 SFLD p-type atpase 432 804 IPR044492 -
Dere08g1469 1037 Pfam Cation transporter/ATPase, N-terminus 114 182 IPR004014 -
Dere08g1469 1037 SUPERFAMILY HAD-like 449 857 IPR036412 -
Dere08g1469 1037 FunFam Calcium-transporting ATPase 16 76 - -
Dere08g1469 1037 SMART Cation_ATPase_N_a_2 113 187 IPR004014 -
Dere08g1469 1037 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Dere08g1469 1037 Pfam E1-E2 ATPase 236 428 - -
Dere08g1469 1037 NCBIfam HAD-IC family P-type ATPase 717 840 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 NCBIfam HAD-IC family P-type ATPase 202 496 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 NCBIfam HAD-IC family P-type ATPase 547 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere08g1469 1037 PANTHER CATION TRANSPORTING ATPASE 80 1013 - -
Dere08g1469 1037 Pfam haloacid dehalogenase-like hydrolase 448 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1469 Dere-ChrDere08 19400953 19407299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1469 57 1034 Primary Pumps ATPases AT3G57330 68.641 0.0 1378