LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1449	ATGGGGTACTTCTCTTGTAGAGCTGAATCTGCCGTTTCAACCTCCAATTCTCTGTCTCCATCTTCCTCCTCTAAACCCTCCTCTACTCACAAACCAGAGAAGCCTATCAAGATCCAACACTTCGACTACAGCGACCTTGAAGCCGCCACCAATGGCTTCTCCGACCGAAAGCTCCTAGGCAAAGGCAGCCATGGCTATGTCTACAAAGCCGTTCTTCGGGGCCGTCCCGTGGCCGTCAAGAGACCGTCAAGAGTTCAAGGTTCTGTTCTTCGACGTTCTTCTTCTTCTTCTTCGGCGCCGGAAATTACGAACGAAGTCGAGAACGAGATCGACATCTTGTCGAAAATTCAGAGCCCCAGATTGGTCAATTTGGTTGGGTTCACGAATGATTCCAAAGATAGACTTCTGGTTGTGGAATTCATGAGCAATGGAACCCTCTACGATGTTCTTCATTCCTCTGCTCGAACACCCAATTGGGGTCGGAGAATTCGATTGGCTTTGCAAACTGCGAAGGCCATCGATACCCTTCATTCCTCAACCCCGCCTGTAATTCACCGAGATATCAAATCTGCGAATGTTCTTATAGATCGAAACTTTAATGCTCGATTGGGAGATTTTGGGTTAGCCCTGCGAGGCCATGAAGATGATTACCGACTCAGGTCTACTCCTCCAGCAGGTACTATGGGGTATCTTGACCCTTGCTATGTGACCCCAGATAACTTGAGTACAAAAACTGATGTGTTTAGTTTTGGGATTTTGTTGTTAGAGATAATTAGTGGAAGAAAAGCCATTGATATTACATATTCACCTCCTTCCATTGTGGATTGGGCTATTCCTCTCATAAGGAAAGGAAAGCTATTGGCTGTTTATGATCCTAGAATATCACCTCCTAAGGATCCAATTGTTAGGAAGCAATTGGCTGTGATTGCTGCAAAATGTGTGAGGTCTTGCAGGGAGAGAAGGCCTTCGATGAAGGAGATAGTTGCTTGGCTTAGTGGGTTGTGTAAGCTGGTACCTCTTCATTCTTGGAATGGTTTTAACAATCCCTGTATGATGATTGAGACTGTGGGACGCCCAGTTGAAGCAAGAAATGCCCATTCGAATTCAAGACAAGAAGGTTTAGAAGGCGGAAATTTTGATCCCTTTGATGCTAGATTGTCTAAATCTGCAGCTAGATATTCAAGGAGAGTATATTCTGATCTGGGGTTCAGTAGCAACTTGATGGACCTTATGGCTGACACTGAGGAGCCAGAATTTCTAAGAGATGCTAAATCTGGCTATCGAGTTTCTAGCTCCAGGTTTGGTAGTGGACGATATTTCACAAGGGGCATAAATCTTTATAGGGCATGTGGTACAGATAAAGATGCTTTTGGTTTGAGTGAAGGCAAAATTATTGGTGGTGGGAGCTCAAATTTGTGCTCAAAACAAGAAGGTATTTCTGGTTCTGATTTGAATTCTCAGGCAGCTGAAGCTAATTCTAGTTAA	1485	0.4451	MGYFSCRAESAVSTSNSLSPSSSSKPSSTHKPEKPIKIQHFDYSDLEAATNGFSDRKLLGKGSHGYVYKAVLRGRPVAVKRPSRVQGSVLRRSSSSSSAPEITNEVENEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTLYDVLHSSARTPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNFNARLGDFGLALRGHEDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIRKGKLLAVYDPRISPPKDPIVRKQLAVIAAKCVRSCRERRPSMKEIVAWLSGLCKLVPLHSWNGFNNPCMMIETVGRPVEARNAHSNSRQEGLEGGNFDPFDARLSKSAARYSRRVYSDLGFSSNLMDLMADTEEPEFLRDAKSGYRVSSSRFGSGRYFTRGINLYRACGTDKDAFGLSEGKIIGGGSSNLCSKQEGISGSDLNSQAAEANSS	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1449	494	SMART	serkin_6	53	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1449	494	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	183	195	IPR008271	GO:0004672\|GO:0006468
	Dere08g1449	494	ProSiteProfiles	Protein kinase domain profile.	53	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g1449	494	FunFam	Serine/threonine-protein kinase-like protein At1g28390	22	140	-	-
	Dere08g1449	494	PANTHER	OS01G0253100 PROTEIN	21	334	-	-
	Dere08g1449	494	Gene3D	Phosphorylase Kinase; domain 1	33	140	-	-
	Dere08g1449	494	ProSitePatterns	Protein kinases ATP-binding region signature.	59	80	IPR017441	GO:0005524
	Dere08g1449	494	SUPERFAMILY	Protein kinase-like (PK-like)	27	331	IPR011009	-
	Dere08g1449	494	Gene3D	Transferase(Phosphotransferase) domain 1	141	339	-	-
	Dere08g1449	494	FunFam	Serine/threonine-protein kinase-like protein	141	344	-	-
	Dere08g1449	494	MobiDBLite	consensus disorder prediction	8	29	-	-
	Dere08g1449	494	Pfam	Protein tyrosine and serine/threonine kinase	57	329	IPR001245	GO:0004672\|GO:0006468
	Dere08g1449	494	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1449	Dere-ChrDere08	19206989	19208473	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1449	41	331	Receptor kinase-like Gene Family	AT3G59420	44.108	9.92e-74	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Dere08g1449		PK_Tyr_Ser-Thr	5.5e-38	CL0016