Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1444 ATGGGTCGAGGGAAGATTGAGATCAAAAGGATCGAGAATGCTAATAGCAGGCAAGTCACATTCTCGAAGAGGCGTACTGGGTTGCTTAAGAAGGCTCATGAGCTTGCTATTCTCTGTGATGCCGAGGTTGCTGTGATCATCTTCTCCAATACAGGGAAGCTTTTCGAGTTTTCGAGTTCTGGTATGATGCGAACACTTTCAAGATACAACAAGTGCTTTGATTCTTCAGAGGCTGCTGTAGTGGAATGTAAGACAGAGAAGGAAGATTCTAAGACAGTGGAGATTCTTAAAGACGAAATTGCAAAGCTAGAAAAAAACCAATTACGGTTGTTGGGTAAGGACCTGACAGGATTGGGTTTAAAAGAATTGCATCAACTTGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGAGAAGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAGTCAAGAGTAAAGGAACAAAGGGCTATGTTGGAGAATGAAACTTTGCGCAGACAGGTCGAGGAGCTTCGATGTTTGTTTCCAACAACTGAGCGTGTGGTCCCTTCTTTTCTTCAATACCATCATGTAGAAAGAAGGGATGCCCTTGTAAATAATGGTGTCATATGCTCCAACTTGGCCAGTAACTGTGAAAATGAGAACGGAGATTCAGATACCACATTGCATTTAGGGTTGCCCACTGATGTTCATCACAAGAGGAAGGCTCCTGAGAAAGAAACCTTCTCCAATGACTCTGAGTCTCAAATGGCTCTGCTTTGA 768 0.4323 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAHELAILCDAEVAVIIFSNTGKLFEFSSSGMMRTLSRYNKCFDSSEAAVVECKTEKEDSKTVEILKDEIAKLEKNQLRLLGKDLTGLGLKELHQLEQQLNEGLLSVKEKKEELLMEQLEQSRVKEQRAMLENETLRRQVEELRCLFPTTERVVPSFLQYHHVERRDALVNNGVICSNLASNCENENGDSDTTLHLGLPTDVHHKRKAPEKETFSNDSESQMALL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1444 255 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere08g1444 255 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere08g1444 255 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Dere08g1444 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Dere08g1444 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 MobiDBLite consensus disorder prediction 221 255 - -
Dere08g1444 255 Coils Coil 123 143 - -
Dere08g1444 255 MobiDBLite consensus disorder prediction 228 244 - -
Dere08g1444 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Dere08g1444 255 Coils Coil 86 113 - -
Dere08g1444 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere08g1444 255 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Dere08g1444 255 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Dere08g1444 255 Coils Coil 149 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1444 Dere-ChrDere08 19139987 19144033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1444 1 248 MADS-box Gene Family AT5G13790 57.028 7.22e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere08g1444 K-box 2.9e-17 No_clan