LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1411	ATGTCTAATAGTTCCTCTCACGGTCTTTTCTTCGTCTCACTAGCGTCAAACCCATGTGCAGAAAGGCTAGGTTCGCTCATGTTTTCAGTAGCCAAAAACTTCATCATATTTTTGGCGATGGTGCTTGTGTGCAATGGTGTGCATTATCTCCTAAAGCCTTATTCAATGCCTCGCATTATTTCTGACATGCTTGTAGGAGTGCTTGTGGGCAACATAGGCTTCCTACGTGCCATATACGACGAATTCAACAAGACCTTTGGATTCATCATTGATTTCGTGATGATGTTCTACATGTTTGCTCTGGGTATAGAAATGGATCCGTATTCGATCTTTAAACGTCCATCTCGCGACGCTCAAATTGCCTACGCAGGAATCGTATCCACCTTCCTCCTTGCCTGCTTCATAACACCATTTTTCAACTACTTCTCAGGCAAACACAAGCTAGACTTCACACTCTCCCTCTCCACTCTCCTCTCCGGCACGGCGTCGCCGGTGTTGACACGCCTAATAACAAGCCTCAAAATCAGCAAGTCCGACATCGGAAAGCTCGTCATCGCCGCCGGCATGCACTCCGACCTCCTATGCTCTCTGATTCTCTCAATCGGCTACATCGCCATGCCCTTGCCGGTGTTTTGCGACAGTGAATCTCAGGGGAAGAATATCACTAACCAAGCACGCCTTAAAATGTCCATTGTTATGGGATGTGCAGTTCTAGGGCAAATGTTGTTCACAGCCATAGTCTCTCCTGTATTCATGAGATGGGTTAATAACGAAAACCCAGAAGGCAAACCCATGAAAGGTCCACACCTGGTGCTTTCTGTTGCGTTTATGGTGTTGATCTGTGCATCATCGACTCTGTATAATTACAGTCCGATTCTGAGTGCGTTCATGGCTGGGATATGGTTGCCACGTGAGGGACGGCTATCAAAGTGGGTGATCACGAAGATAAACTATTTGCTGTCTTCGATTTTCTTTCCTGTGTTTTTCTTGTGGATGGGTTATGGAGCTGATTTCAGGATGTTTGAGGCTGGGAAATTAGCAACGTGGGGAAGATTGCTCATGCTGGTTGTGATAGGAATGGCTAGTAAAGTTGCTGGAACTGTTGTTTCTGGAGCCATGCTGGGTTTTAATTGGCCTGATTCTGTGGCCATTGGGTTGCTTCTCACCACCAAGGGCCATTTTCATATCTACTTGGCCATCAAAGTGATGAAATGTGGAGGCAATACTACCACTGGCATCGTGATGATAATTGCAATATTTTTCACAGTTCTACATTCTCCATCAGTGATAGCACACATCATCAAACGAGCCAGGAAAAGAGCACCAACCCATCGCATGGCCCTCCAATTGCTCGACCCATCAAGCGACCTCAGGATTCTCCTGTGCCTTCACGGACTCGAAAACGTCCCTGCTTGCATCAACTTCATGGAGATCACCAGAGGAACGACAGACCCCGGAATGGTCGTTTACGTCACCGACCTGGTCGAGCTCACCAATGAACTAGCCGCCACAGTGGAGAGGGATGGAGGAGCGGAAGGTAATAATACGGTGACGCTAAACGACGATGCTGTCTCAGGCATGAGAGATAAAGTGACGAGCTCGTTTCAGGGATATATGGAGGAGGATGGTGACGGGATTAGTCTTAAGAGATCGATGGTGGTGTCGACGTTCAACAACATGGCACGTGACATCTGCTCTTTGGCTGATGAAATGACTATTGCCCTCATCGTCTTGCCGTTTCATCGGAGGCAGCGTGAGGATGGAACACTCGACGGAGGCAATCCAGGGTTCAGGCACGTGAATCGAAAGGTATTGAAAAGTGCGCCATGTTCGGTTGGAATTCTAGTGGACAGAGGCCTAGGATCCATCAAGAAGATCCTAAGATCCTGCATCTCACTCAACGTGGCAGTCATCTTCGTCGGCGGAAAAGACGACCGAGAAGCGATCGCCTACGCCGGTCGCGTCGCCAGGCATCCCGGCGTCAAACTCACCGTAATAAGACTCCTCGTCGACTCCACTTCCGAGGCCTCCAGATACTCCGGCCATATCGGCGTGAACCTGTCGGAGCAAGAAGAGGAGACGGCGCTGGACGACGAGTGCTTCGCGCAGTTCTACGAACGACACGTCGTCGGGGGTCGCATTGCCTACACGGAGAAGCACCTCATGAACTCCGGCGAAACGTTCTCGGTGCTCAAGTCGTTTGAAGGGCAGTACTCGCTGGTGGTTGTGGGGAGAGAAGGAGGAGTGAACTCTATACTGACCAAAGGTATGAGTGACTGGCAGCAATGTCCAGAACTGGGACCCATAGGAGATGTTCTTTCGGGACCAGATTTTTCAACGACGGTTTCGGTGTTGATTATACAACAACATAAGCTTAAAGGAGAGCTTGATGGGTTAGAAGATGATTTCACTGTTATGATGTAA	2424	0.4897	MSNSSSHGLFFVSLASNPCAERLGSLMFSVAKNFIIFLAMVLVCNGVHYLLKPYSMPRIISDMLVGVLVGNIGFLRAIYDEFNKTFGFIIDFVMMFYMFALGIEMDPYSIFKRPSRDAQIAYAGIVSTFLLACFITPFFNYFSGKHKLDFTLSLSTLLSGTASPVLTRLITSLKISKSDIGKLVIAAGMHSDLLCSLILSIGYIAMPLPVFCDSESQGKNITNQARLKMSIVMGCAVLGQMLFTAIVSPVFMRWVNNENPEGKPMKGPHLVLSVAFMVLICASSTLYNYSPILSAFMAGIWLPREGRLSKWVITKINYLLSSIFFPVFFLWMGYGADFRMFEAGKLATWGRLLMLVVIGMASKVAGTVVSGAMLGFNWPDSVAIGLLLTTKGHFHIYLAIKVMKCGGNTTTGIVMIIAIFFTVLHSPSVIAHIIKRARKRAPTHRMALQLLDPSSDLRILLCLHGLENVPACINFMEITRGTTDPGMVVYVTDLVELTNELAATVERDGGAEGNNTVTLNDDAVSGMRDKVTSSFQGYMEEDGDGISLKRSMVVSTFNNMARDICSLADEMTIALIVLPFHRRQREDGTLDGGNPGFRHVNRKVLKSAPCSVGILVDRGLGSIKKILRSCISLNVAVIFVGGKDDREAIAYAGRVARHPGVKLTVIRLLVDSTSEASRYSGHIGVNLSEQEEETALDDECFAQFYERHVVGGRIAYTEKHLMNSGETFSVLKSFEGQYSLVVVGREGGVNSILTKGMSDWQQCPELGPIGDVLSGPDFSTTVSVLIIQQHKLKGELDGLEDDFTVMM	807

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1411	807	PANTHER	CATION/H + ANTIPORTER	33	791	-	-
	Dere08g1411	807	Gene3D	-	31	443	IPR038770	-
	Dere08g1411	807	Gene3D	-	487	760	-	-
	Dere08g1411	807	FunFam	Cation/H(+) antiporter 28	31	443	-	-
	Dere08g1411	807	Pfam	Sodium/hydrogen exchanger family	36	433	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1411	Dere-ChrDere08	18610831	18616162	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1411	31	806	Antiporter Super Family	AT3G52080	49.047	0.0	787