Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1409 ATGGATCCTTCTTACGAGATTGAAGTTACATGCACTTGTGAAGTTTTTCCACTACTCTACTCACCTATTACTGTTGCCACTTATGATTATGCAAGCAATCATGATCAGTTGTTCAACGTCGAAATCATATGCGAAAACTGGATTTGGCAAGTTCCAAGCCTAGAATATAATATGCATACAACAACGCAGGTGTTCTCCAACATTCCAAAGGAGGAAATAGAACAATTATCAAACATTATTCCCATTGATTTTGATGTTCCTGAAGGTTCTCGCAGCTCCATGGCAGCGAAGATTTTAGATTGTGCAAGAAACATGGCTGACAATACACACAAGAACCACAAGATTTTGAATATGGTCGTACGTATTGGATGTCACACCTGGATCTATACTGACGAGAGCGATGATGATGATGATGATGAAGCTGTGCAGGAATCTTTGGAGGATCAAGGCAATTTGTTGATCCCTGCAAGTGAGTCATTCATTCAAGGATTGGAGACGGCGAGGGTGGAACAAGAAGGTGATTGTTCAATTTGTCTTGAAGATTATGAAGATGATGCAGAAGGTGTTCGTTTGCCATGCTCACACTTGTTTCATAGAATTTGTATTGTTAATTGGTTGCGTAGGGGGAGTGTTTGTCCTTTGTGTCGCCTTCAAATGCCTACCGGTGATAATTAG 675 0.4059 MDPSYEIEVTCTCEVFPLLYSPITVATYDYASNHDQLFNVEIICENWIWQVPSLEYNMHTTTQVFSNIPKEEIEQLSNIIPIDFDVPEGSRSSMAAKILDCARNMADNTHKNHKILNMVVRIGCHTWIYTDESDDDDDDEAVQESLEDQGNLLIPASESFIQGLETARVEQEGDCSICLEDYEDDAEGVRLPCSHLFHRICIVNWLRRGSVCPLCRLQMPTGDN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1409 224 Pfam Ring finger domain 174 216 IPR001841 -
Dere08g1409 224 CDD RING-H2_PA-TM-RING 174 216 - -
Dere08g1409 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 220 - -
Dere08g1409 224 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Dere08g1409 224 SUPERFAMILY RING/U-box 174 220 - -
Dere08g1409 224 SMART ring_2 175 215 IPR001841 -
Dere08g1409 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 222 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1409 Dere-ChrDere08 18595267 18595941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1409 144 223 C3H Transcription Factor Family AT1G68070 44.578 7.06e-16 73.6