Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1407 ATGCCAAGACTTAGGGTTTATCCAAAATACTACAAAAAGTTCAGGAACCGAAAGCTAGGGTTTTGGGCAAGGAAGGAGGGCATGGAGGCCGCGGTCGTCGATGCCGGCTCAAAGCTCCTCAAAGCGGGATTTGCAATTCCCGATCAAGCTCCAGCTATGATTATTCCTACTCAGATGAAACGCATGCTTGATGATGGATCAGTGACTGATAATTCATTAGTTGATGATGTTGCCATTGATCCCATTGTGCGAGGATTTGTCAGGGATTGGGATGCAATGGAGGATTTGTTGCACCATGTTTTGTATACTGGCCTGGGATGGGAAATGGGCAATGAAGGACAAATACTATTTACGGATCCTCTTTGTACCCCAAAGGCTAATAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGCTTTTATGCCTCAGAACAAGCAGTGTTATCACTGTATGCTGTGGGACGTATCTCAGGATGCACAGTTGATATTGGTCATGGGAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTACATCACATTGCCTCAAAAAGATTTGAGTTTGGAGGCGTTGATTTAACAAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCGCTAGTAAATATCAGCATATCTGATGTTGAGAAAATAAAAGAGCAATACTCATGTTGTGTTGAAGATGAATTAGCTTATCAGAAGACTCAAGATTCTTGTCCTGTGGAGAAACACACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACTGTTGGTGAGGCTTTATTCCAGCCATCTCTATTGGGTTTAGAGACGCATGGAATTGTTGAACAGCTTGTACGTACTATTTCAACTGTGTCATCAGATAATCATCGGCAACTGCTGGAAAATACTGTGGTTTGTGGTGGCCCTTCTTCTATGACTGGCTTTGAAGAGAGGTTTCAGAAGGAAGCTGGCCTGACGTCATCTGCCGTTCGACCTACTCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCACATATTCAGCATGGGTGGGAGGTGCTATACTTGCCAAAGTAGTTTTCCCACAAAATCAGCATGTAACTAAGGCAGACTACGATGAAACTGGACCCTCCATCGTTCACCGAAAATGTTTCTGA 1167 0.4293 MPRLRVYPKYYKKFRNRKLGFWARKEGMEAAVVDAGSKLLKAGFAIPDQAPAMIIPTQMKRMLDDGSVTDNSLVDDVAIDPIVRGFVRDWDAMEDLLHHVLYTGLGWEMGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASKRFEFGGVDLTNFLAQELGKSNPLVNISISDVEKIKEQYSCCVEDELAYQKTQDSCPVEKHTLPDGQVITIGRERYTVGEALFQPSLLGLETHGIVEQLVRTISTVSSDNHRQLLENTVVCGGPSSMTGFEERFQKEAGLTSSAVRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1407 388 PANTHER ACTIN 31 381 IPR004000 -
Dere08g1407 388 Gene3D Actin; Chain A, domain 4 192 279 - -
Dere08g1407 388 FunFam Actin-related protein 7 31 154 - -
Dere08g1407 388 SMART actin_3 28 388 IPR004000 -
Dere08g1407 388 Pfam Actin 28 388 IPR004000 -
Dere08g1407 388 SUPERFAMILY Actin-like ATPase domain 158 388 IPR043129 -
Dere08g1407 388 Gene3D - 150 351 - -
Dere08g1407 388 Gene3D - 32 382 - -
Dere08g1407 388 CDD NBD_sugar-kinase_HSP70_actin 31 193 - -
Dere08g1407 388 PRINTS Actin signature 152 171 IPR004000 -
Dere08g1407 388 PRINTS Actin signature 50 59 IPR004000 -
Dere08g1407 388 PRINTS Actin signature 244 260 IPR004000 -
Dere08g1407 388 PRINTS Actin signature 127 140 IPR004000 -
Dere08g1407 388 FunFam Actin-related protein 7 192 279 - -
Dere08g1407 388 SUPERFAMILY Actin-like ATPase domain 27 165 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1407 Dere-ChrDere08 18564567 18578885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1407 23 388 Cytoskeleton Gene Families AT5G09810 38.021 1.01e-71 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1407 08 18564567 18578885 Dere08g1407 08 18564567 18578885 ECH