Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1405 ATGTCTCCGCAAGGGCCAGTCCTCTCCCTCCTCCTCATCACACTCTGCTTAGCCTTCTGTTTTGGCTCTTACATAGATGACCCACTCAATGCTCCAAGACACGAACATTTTGGCCTCATGACAAGGGCCTACAGAACCACCCAGGCTTCAAGGTCACAAGCAACATTTAGTGTCGATGACTATGGAGCCAAAGCCAATGATGGAAAAGATGATTCTAAGGCCTTCAAGAAAGCTTGGAATCAGGCTTGCTCTAATGGTGCTGCTCTTCTTGTTCCTGCAAAGAAGGTCTATCATCTTAAGCCAATAACATTTTCAGGTCCATGCCAGCCAAATACTGCTTTTCTGGTGTATGGAAAAATCACAGCATGGCCAGACATGTCTGTGTATGAAGAAGATAGAAGACACTGGATTCAGTTTGATGGCATCAATAATTTCAGAGTTGATGGTGCTGGCATGGGCACTTTCGATGGCAATGGGAAGAAATGGTGGCAAAATTCTTGCAAAATCAACAAAAACCTTCCATGCAAAGAGGGGCCAACTGCTGTAACTTTCAACGAATGCAACAATTTGAGAGTGGAAAACCTGAGGTTCAAAAATTCACAGCAAATGCATGTTAATTTCCAGAAATGTTTCAATGTTAGAGTTTCAAATCTCATAGTGAGAGCCCCAGGAAACAGTCCCAACACTGATGGGATTCATGTGACAGAGACCCAGAATATTCTCATAAGTAACAGTATAATTGGGACAGGTGATGACTGCATTTCAATAGTAAGTGGATCTAAAAATGTTAAAGCTACAGACATAACTTGTGGACCAGGACATGGAATCAGTATTGGAAGCTTAGGAGCTGATAACTCAGAAGCTGAAGTGTCCAATGTGATAGTGAACAGAGCTACCCTGATAGGGACAACCAATGGGGTGAGAATAAAGACTTGGCAGGGGGGCTCAGGGTATGCAAGAAACATCAAGTTCATGAATATAGCAATGAGAAATGTGACAAACCCCATCATCATAGATCAAAATTATTGTGATCAAGATGAAAGCTGCCATGAGCAGGGATCAGCTGTACAACTGAGCAATGTGTTATACCAAAACATAAGAGGAACAAGTGCCTCGGAAGTGGCCATTAAATTTGATTGTAGCAAAGCCAACCCTTGCAGAGACATCTACGTTCAGGATGTGATCTTAGAACCTGAAGGACAAGGAGGAGCCATTGCTTCATGTGACAATGTTCAATATGTCAACAGAGGAAAGCTTTTCCCTCAGTGTACTCATGAATAA 1281 0.4262 MSPQGPVLSLLLITLCLAFCFGSYIDDPLNAPRHEHFGLMTRAYRTTQASRSQATFSVDDYGAKANDGKDDSKAFKKAWNQACSNGAALLVPAKKVYHLKPITFSGPCQPNTAFLVYGKITAWPDMSVYEEDRRHWIQFDGINNFRVDGAGMGTFDGNGKKWWQNSCKINKNLPCKEGPTAVTFNECNNLRVENLRFKNSQQMHVNFQKCFNVRVSNLIVRAPGNSPNTDGIHVTETQNILISNSIIGTGDDCISIVSGSKNVKATDITCGPGHGISIGSLGADNSEAEVSNVIVNRATLIGTTNGVRIKTWQGGSGYARNIKFMNIAMRNVTNPIIIDQNYCDQDESCHEQGSAVQLSNVLYQNIRGTSASEVAIKFDCSKANPCRDIYVQDVILEPEGQGGAIASCDNVQYVNRGKLFPQCTHE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1405 426 PANTHER - 53 411 - -
Dere08g1405 426 FunFam Polygalacturonase QRT2 41 424 - -
Dere08g1405 426 Gene3D - 40 423 IPR012334 -
Dere08g1405 426 SUPERFAMILY Pectin lyase-like 46 424 IPR011050 -
Dere08g1405 426 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
Dere08g1405 426 SMART pbh1 290 311 IPR006626 -
Dere08g1405 426 SMART pbh1 210 236 IPR006626 -
Dere08g1405 426 SMART pbh1 237 258 IPR006626 -
Dere08g1405 426 SMART pbh1 319 340 IPR006626 -
Dere08g1405 426 Pfam Glycosyl hydrolases family 28 88 412 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1405 Dere-ChrDere08 18547874 18551573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1405 7 424 Glycoside Hydrolase AT3G07970 57.078 1.68e-162 463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1840 07 29810781 29811999 Dere08g1405 08 18547874 18551573 CCT
Dere08g1405 08 18547874 18551573 Dere08g1405 08 18547874 18551573 ECH