Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1399 ATGCGATCTTTTTTGCAAATAAAAGTTACCTCTTTCCAACTTCTTATGATGCTTGTCCTTTGGTCAAGCTTGAGTATGTTCTTTATCTGGCTCTTTTTAAGATATATGATAATGGGGAAGGACAAGAACAGTAGTAACAAGAACAATAACGTTGTGAAGCTGAGGAAGGGCTTGTGGTCGCCGGAGGAAGACGAGAAGCTGATAAGGTACATGTTGACCAATGGACAAGGTTGCTGGAGTGACATTGCCAGAAATGCAGGCCTTCAGAGGTGTGGCAAAAGTTGTCGCCTTCGCTGGATTAACTATCTGAGACCTGACCTCAAGAGAGGTGCTTTCTCTGTCCAAGAAGAAGAGCTCATTGTTCATTTGCATTCCATTCTTGGCAATAGGTGGTCTCAGATAGCAGCACGTCTTCCGGGACGCACAGACAATGAGATTAAGAACTTTTGGAACTCTACATTGAAGAAAAGAATGAAGAACAACACTACCACTACCACTTCCACTACTCCTTCACCAAACAACAGTAATGACTCCACATCAGATCATCATGTTCTGAATGGGTTCACCTCCATGCCCTTCAATAAACGTGACCTCATCAACATGACCATGTGCATGGACTCATCATCATCATCAATATCATCAACATCATCCATACAATCCATGCAAGCCGTGGCTTTTGGCGGTGAATTGATGGAATATCCCTTTTCCATGTTGAATAGCAGTAACACTTATGACATGCCGGCATGCTTAACCCAAGTTGGTGGTGGGATGGTAGATGATGGTTTTTATGGTGATGATTATAGCGGGGTGGTATTAGAGGGTGATAAAAAAATGGGGTTAGAAAGAGACCTCTGTCTTCCTCCACTAGAGAGTAGAAGCATGGAAGAGAAATATAATAGTAGTGCTCCTATTGATGTGAAAAGCCATAACAACAACCATTTTAATAATGGTTGCTTCAATAACACCGATCATCAGGGCTCCAAAGTAGATCTTCAATATCATCATCAGGACTTGTTTGCATTTGGAAACAATCATGGGCAATCAGGGGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGATATATCCTCTTTTCCTTTCCTTGATTTCCAAGTTGAATGA 1134 0.4171 MRSFLQIKVTSFQLLMMLVLWSSLSMFFIWLFLRYMIMGKDKNSSNKNNNVVKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSVQEEELIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNTTTTTSTTPSPNNSNDSTSDHHVLNGFTSMPFNKRDLINMTMCMDSSSSSISSTSSIQSMQAVAFGGELMEYPFSMLNSSNTYDMPACLTQVGGGMVDDGFYGDDYSGVVLEGDKKMGLERDLCLPPLESRSMEEKYNSSAPIDVKSHNNNHFNNGCFNNTDHQGSKVDLQYHHQDLFAFGNNHGQSGENLRMGEWDLEGLMQDISSFPFLDFQVE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1399 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Dere08g1399 377 Pfam Myb-like DNA-binding domain 109 153 IPR001005 -
Dere08g1399 377 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
Dere08g1399 377 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Dere08g1399 377 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Dere08g1399 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 103 IPR017930 -
Dere08g1399 377 SUPERFAMILY Homeodomain-like 54 150 IPR009057 -
Dere08g1399 377 CDD SANT 111 154 IPR001005 -
Dere08g1399 377 MobiDBLite consensus disorder prediction 157 183 - -
Dere08g1399 377 PANTHER MYB DOMAIN PROTEIN 55 48 334 - -
Dere08g1399 377 FunFam Transcription factor MYB46 110 184 - -
Dere08g1399 377 SMART sant 108 156 IPR001005 -
Dere08g1399 377 SMART sant 55 105 IPR001005 -
Dere08g1399 377 Gene3D - 110 184 - -
Dere08g1399 377 Gene3D - 53 109 - -
Dere08g1399 377 FunFam MYB transcription factor 53 109 - -
Dere08g1399 377 CDD SANT 59 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1399 Dere-ChrDere08 18419505 18425789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1399 39 377 MYB Transcription Factor Family AT3G08500 47.875 2.76e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g1399 Myb_DNA-binding 4.7e-13 CL0123