Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1396 ATGATTCTATTTCCTCCGATTTCAGTTTCCGTCGTTCTTGGATTTTCGCGGCTCTTCTGTTTGGAATGTGAATTGTTGTTGAAGTATTGGTTCAAAATGAATGATGGGAGACCAATGGAGGTGCATTACATAAACACTGGTTTTCCATACACTGTTACTGAAAGCTTCATGGACTTCTTTGACGGCCTCAATCATGTGCCAGCGAATTATGCTCACGCTGGACCAATTACTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAACCCCTATAAATTTGGATTGTCTGGTCCGGGGAGTACATCTTATTATGGTTCTTATGAGGTAAATTATAGTTTACCAAGAATGGAGCTCGACAGGGGAGAGTGGGAATATCCTTCTACAATGACCACTGAGGAGCCCTCTACAACAGACTCTCCATCCACAAGAGATGGAGTCATTGGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCATGATTCCAGTAGTGCTCAGAACTTATCTTCTAACCGTTTCTGTGCATTGCTGCAGGTCATATGGCAGGACAATATTGATCCCGATAATATGACTTATGAGGAATTGCTGGACTTGGGTGAGGCTGTTGGAACTGAAAGCCGAGGCCTTTCTCAAGAACTTATTGATTTGCTTCCGACTTCAAAGTACAAATTTAGAAGCTTATTCAAAAGAAAAAATTTTGGGAAAAGGTGCGTAATTTGTCAGATGACGTATAGAAGAGGTGACCAACAAATAAAATTACCATGCAGGCACGTTTACCACGGGGAATGCATCACTAAATGGCTTAGCATCAACAAGAAATGTCCAGTTTGCAACGTTGAAGTATTTGGTGACGAATCAACGCAATAG 870 0.4172 MILFPPISVSVVLGFSRLFCLECELLLKYWFKMNDGRPMEVHYINTGFPYTVTESFMDFFDGLNHVPANYAHAGPITDQESVYWSMNMNPYKFGLSGPGSTSYYGSYEVNYSLPRMELDRGEWEYPSTMTTEEPSTTDSPSTRDGVIGMQTIPEECSPNHHDSSSAQNLSSNRFCALLQVIWQDNIDPDNMTYEELLDLGEAVGTESRGLSQELIDLLPTSKYKFRSLFKRKNFGKRCVICQMTYRRGDQQIKLPCRHVYHGECITKWLSINKKCPVCNVEVFGDESTQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1396 289 FunFam E3 ubiquitin ligase BIG BROTHER 200 283 - -
Dere08g1396 289 SUPERFAMILY RING/U-box 237 283 - -
Dere08g1396 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 283 IPR013083 -
Dere08g1396 289 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 37 285 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dere08g1396 289 Pfam Ring finger domain 237 279 IPR001841 -
Dere08g1396 289 SMART ring_2 238 278 IPR001841 -
Dere08g1396 289 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1396 Dere-ChrDere08 18395139 18398977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1396 35 287 C3H Transcription Factor Family AT3G63530 54.118 2.26e-96 282