Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1394 ATGACAGACCCTCCCTCCAATTTCTTCTCTAAATGCTTCAACTTCATCCCCCTCCATCCTCACTACTACTCTTCTAATTCCTACAATAGATTTTCCATTCAATTCCAGCCTCCTCGTCCTCCTCCTCGTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTCCTCTGAGAGAAGCACTTCCTCTCTTGAACAATCTCACCCTTCTCCCGTCAAACCACAAGGAAAGTACAGAACTACCCTCCAGCATACAAGACAAGGAAATAGTTATGGACAAAGCTGAGGAGAGTGAAACTGTGACTGTTGCCCTACGCATAGGACTTCCCAGCATGAGTGGTGGTAAAAGGAGTAGTACTCAGATTTCTAACTCCTCCATCGAAACGACGGAGAAAGATGAAGTGGGTGGTGTTGTTTCTGGACACCACCCTTTCGATCCATTGAACAAGGGTCAGTATTGGATCCCCACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTCTGCTCCAAGACCTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTCTGAGAGGAACGCAACCCACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCACCTAACTGCAAGCACAACATCGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGCATCAAACCCTACATGTGCAGAAAATGCAGCAAGGCCTTCGCTGTGAAAGGTGACTGGAGGACCCACGAGAAGAACTGTGGCAAAATATGGTATTGCCTTTGTGGGTCTGATTTCAAACACAAGAGGTCTCTGAAAGACCACATTAGGGCCTTCGGCCATGGCCATGGTGGAGCTTTTGCTGGGGCAGATTGCTTGCAGGAAGAAGATGAAGCTAACTCTGAGATTGAACATGATGGGGGGGAAAACTCCATGTGA 999 0.4775 MTDPPSNFFSKCFNFIPLHPHYYSSNSYNRFSIQFQPPRPPPRPPPSSSSSSSSSPPLREALPLLNNLTLLPSNHKESTELPSSIQDKEIVMDKAEESETVTVALRIGLPSMSGGKRSSTQISNSSIETTEKDEVGGVVSGHHPFDPLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFAGADCLQEEDEANSEIEHDGGENSM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1394 332 FunFam Zinc finger protein WIP2 221 303 - -
Dere08g1394 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Dere08g1394 332 MobiDBLite consensus disorder prediction 33 59 - -
Dere08g1394 332 MobiDBLite consensus disorder prediction 113 131 - -
Dere08g1394 332 SUPERFAMILY beta-beta-alpha zinc fingers 236 272 IPR036236 -
Dere08g1394 332 MobiDBLite consensus disorder prediction 35 51 - -
Dere08g1394 332 Pfam Zinc finger, C2H2 type 168 187 IPR013087 -
Dere08g1394 332 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Dere08g1394 332 FunFam zinc finger protein WIP2-like 167 190 - -
Dere08g1394 332 Gene3D Classic Zinc Finger 250 299 - -
Dere08g1394 332 Gene3D Classic Zinc Finger 167 190 - -
Dere08g1394 332 PANTHER ZINC FINGER PROTEIN WIP2 30 325 IPR043584 GO:0003700|GO:0010468
Dere08g1394 332 SUPERFAMILY beta-beta-alpha zinc fingers 161 190 IPR036236 -
Dere08g1394 332 SMART c2h2final6 168 190 IPR013087 -
Dere08g1394 332 SMART c2h2final6 278 301 IPR013087 -
Dere08g1394 332 SMART c2h2final6 252 272 IPR013087 -
Dere08g1394 332 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1394 Dere-ChrDere08 18359798 18362087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1394 1 332 C2H2 Transcription Factor Family AT3G57670 53.351 4.42e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1394 zf-C2H2_6 8.8e-05 CL0361