Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1393 ATGTCTAAGAGCCAATGCCCTCAGAATGCTTTGACAGAGGATGGATTCATACCAGTTGACATGGTCAAGTTTTATGCCCGTGGAGCATGTGTGAAAGGGGAGCAATTAGATTACTCTCATGATAGAAAGGATACTCCAGTTGATATTTGCACATTCTATCAGAAAGGACACTGCTCTTTTGGAAGTCGATGTAGATATAAACATTTCAATGCTACTCAAGCACATTTAGCATCATCTTCTGCAAATGGTCGTCAATCTCTGGCTTCAAATTCTGTTACTGTTCATACTGGTAAAGGAAAATCGAGTTGGGTTCCAAAGAGTACAAATTCGTTTCCTCCCTCTGGCAAACGTGCAAGCAGTGATCATTGTAAGCATCTGAATCCTCAAAAGAATGGTGATGTTGATGAATCCAATACTTCTATACCTTCAGAGCGTATCTTTTGTACATTCGCTGCTGCCAACTGTCCCTCAGGAGAAAAATGTCTACGCATTTATGGAGACCAGTGTCTATACTGCAAAAAGTACTGCTTGCATCCTACTGAACAGCAGGAGAGGAAGAGTCATTTGATTCTTCCTAAAGCAGCTGAACGTAGGTTTGGGATGCTTCCTGAATGTGACCATGCTTTCTGTTTGTCCTGTATCAGGAATTGGCATAGTAGTGTCACACCCTCTGCAATGGACATCTTTAATACCGACAATAATACAGTGAGGACTTGCCCAGTCTGTTGCGAGCTATCATATTTTGTAATTCCAACTTCTATATGGTATTCCACAAAGAAAGAAAAGGAGGACATTATTGATTACTACAAGGCAAGGTTGATTGATTACAAGCATTTTGACTTTGGAAATGGGAATTGTCCATTTGGGACTAGGTGTTTCTACAAGCATACTGGGAAGCCTGGCTCAAAGACATGGAGACATGGCAGGCTACAACCTCCATGCCGGAGCACGATAGATATGCTCAATAATGATTCAAGGCCAAGGTTTTTCGGTGATGACGACGAAGAAATGGGGTTTTTTCAGATGGCTGCTCTATCATCAGCGCTGGATGATCCTTTTGAGGATTCGAACAATGATGAATTGAATCCTATGGAGGCAGCATTGTTATCGGTGATGATGCATTCTACTTTTGAAGAAGATAGTGACGGGGACTGTGATGACTAG 1164 0.4184 MSKSQCPQNALTEDGFIPVDMVKFYARGACVKGEQLDYSHDRKDTPVDICTFYQKGHCSFGSRCRYKHFNATQAHLASSSANGRQSLASNSVTVHTGKGKSSWVPKSTNSFPPSGKRASSDHCKHLNPQKNGDVDESNTSIPSERIFCTFAAANCPSGEKCLRIYGDQCLYCKKYCLHPTEQQERKSHLILPKAAERRFGMLPECDHAFCLSCIRNWHSSVTPSAMDIFNTDNNTVRTCPVCCELSYFVIPTSIWYSTKKEKEDIIDYYKARLIDYKHFDFGNGNCPFGTRCFYKHTGKPGSKTWRHGRLQPPCRSTIDMLNNDSRPRFFGDDDEEMGFFQMAALSSALDDPFEDSNNDELNPMEAALLSVMMHSTFEEDSDGDCDD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1393 387 Pfam CCCH-type zinc finger 49 68 IPR041367 -
Dere08g1393 387 Pfam RNA-binding, Nab2-type zinc finger 281 296 - -
Dere08g1393 387 Pfam Zinc finger, C3HC4 type (RING finger) 176 242 IPR018957 GO:0046872
Dere08g1393 387 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Dere08g1393 387 Gene3D - 20 82 - -
Dere08g1393 387 ProSiteProfiles Zinc finger RING-type profile. 169 242 IPR001841 -
Dere08g1393 387 MobiDBLite consensus disorder prediction 87 138 - -
Dere08g1393 387 MobiDBLite consensus disorder prediction 87 116 - -
Dere08g1393 387 SMART c3hfinal6 275 298 IPR000571 GO:0046872
Dere08g1393 387 SMART c3hfinal6 44 70 IPR000571 GO:0046872
Dere08g1393 387 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Dere08g1393 387 ProSiteProfiles Zinc finger C3H1-type profile. 270 299 IPR000571 GO:0046872
Dere08g1393 387 PANTHER MAKORIN-RELATED 192 349 IPR045072 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1393 Dere-ChrDere08 18347333 18356945 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere08g1393 zf-C3HC4 7.5e-05 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1393 08 18347333 18356945 Dere08g1393 08 18347333 18356945 ECH