Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1392 ATGTCTAAGAGGATTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGTACGTTTTATCAGAAAGGAGTCTGTGCTTATGGTAATCGCTGCAGATATGATCATGTCAGAGCTTCTCGTGAACAGTCCCACAGTTCGCCTTCTTCAGCTAGTGTACACCAGCCCCTAAATTCTGATTCTTTTATTGTTGGTACTACTAGAGTTGCATCAAATGAGGTTACTACAGCTCCTGCATTGTGTTCTCTTAGCGGTCCATCCTTTCATCCTATTATTCCTGCATGGAATGGAGAATCTGAATATCATAGTCCTGCATGGAATCAAGAATCTGATTATCATATTCTTGCCTGGAATCAAGAATGTAGGTATCAAAATTTATTAGAGGAAGGTGATGTTGGTGAATCCAGAATTACTGCCCCTTCTGAGCGTCCTATCTGTTCATTTGCTGCGGCTGGTAACTGTCCCCGAGAGGAAAAGTGCCCTTTTATTCATGGAGATTTGTGTCCCACCTGTGGAAAACACTGCTTGCATCCTTTTCGACCTGAGGAAAGAGAGGAACATATGAAGACTTGCCAAAACAAGCAAAAGCATCTTGAAGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGCGTTCTTTCAAAGCCTTCGGCAGCTGAGCGTAAGTTTGGGCTTCTATCTGAATGTGATCACCCCTTCTGCATATCTTGTATCAGGAATTGGCGTAGTAGCAACCCAACCTTGGGAATGGATGTCAATAGCACATTGAGGGCTTGTCCAATCTGTCGCAAGCTGTCTTACTTTGTCATTCCAAGCGTCATTTGGTACTCTACGACAGAGGAGAAACAGGAAATCATTGACAGCTACAAGGAAAAGCTAAAGTCCATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGCCCTTTTGGAACTAGCTGTTTCTACAAGCATGCCTATCGAGATGGCAGGCTTGAGCAGGTAGTTCTGCGGCATCTCGGGGCTGCAGATGGCAACGCTGTGATTGCTAAAGACATCAGGCTGTCAGATTTCCTTGCTAACATGCATTTAAGATGA 1140 0.4325 MSKRILCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGNRCRYDHVRASREQSHSSPSSASVHQPLNSDSFIVGTTRVASNEVTTAPALCSLSGPSFHPIIPAWNGESEYHSPAWNQESDYHILAWNQECRYQNLLEEGDVGESRITAPSERPICSFAAAGNCPREEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMKTCQNKQKHLEALKRSQEIECSVCLERVLSKPSAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGNGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNAVIAKDIRLSDFLANMHLR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1392 379 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Dere08g1392 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 289 IPR013083 -
Dere08g1392 379 Gene3D - 33 89 - -
Dere08g1392 379 ProSiteProfiles Zinc finger RING-type profile. 226 284 IPR001841 -
Dere08g1392 379 Pfam RNA-binding, Nab2-type zinc finger 318 340 - -
Dere08g1392 379 Pfam Zinc finger, C3HC4 type (RING finger) 226 283 IPR018957 GO:0046872
Dere08g1392 379 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Dere08g1392 379 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Dere08g1392 379 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Dere08g1392 379 SMART ring_2 226 283 IPR001841 -
Dere08g1392 379 ProSitePatterns Zinc finger RING-type signature. 250 259 IPR017907 -
Dere08g1392 379 PANTHER MAKORIN-RELATED 5 359 IPR045072 GO:0000209|GO:0061630
Dere08g1392 379 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Dere08g1392 379 ProSiteProfiles Zinc finger C3H1-type profile. 313 342 IPR000571 GO:0046872
Dere08g1392 379 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Dere08g1392 379 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Dere08g1392 379 SMART c3hfinal6 313 341 IPR000571 GO:0046872
Dere08g1392 379 SMART c3hfinal6 158 183 IPR000571 GO:0046872
Dere08g1392 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 182 IPR000571 GO:0046872
Dere08g1392 379 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Dere08g1392 379 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Dere08g1392 379 CDD RING-HC_MKRN 224 284 - -
Dere08g1392 379 Coils Coil 201 221 - -
Dere08g1392 379 SUPERFAMILY RING/U-box 215 290 - -
Dere08g1392 379 Gene3D - 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1392 Dere-ChrDere08 18328108 18331171 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere08g1392 zf-C3HC4 3e-07 CL0229