Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1387 ATGGATTCTGGAAACGGCCATCCACAACAACAACGTTGTCACTACCAGCAAAGTTCTGGACTATTAAGGTACCGCTCTGCTCCGAGCTCACTGCTGACAAGCATTGCGGAAAGCAGTCATGGGTGTGCGGATCAAATGGAAGAAGCTTGTAGAGGTTTGGATCCTCAACATCAGCAAAATCGTGATGTTCCATCCTTAGGTTCTGAAATGGAAGCCATGCTGGCCAAGTTGGTTTCTTCTTCGAACAATGGATGGAGGAATCCGAATGTGAATGTGAAGCAAGAAGGAGAAGAAGCAGGGGACTCTGTTTTCTGTCATGATGGTCCAGAATCTGATAAGCTAATTCACCATTCTCAGGAACTCCAAGATTTTCCTAATAATTCTTTTTCAAGTGTAATGATGATCAATATGGATTTAGATGCTTCCAATCAATCCAAAATGGCTTCTGGGAATTGCTCCAATCTTCTCATGAGGCAGAGGAGCTCCCCTGCTGGGTTTTTCTCCAACTTCTCTGTTAGAAGTGGTTTTGCAGCATTGGGAGAACAAGCTACAACATCAAGTAGTGGATTGAATGGTGCCCTTACCTTCTCATCTAGGCCATCCTCTTGCCCAAGAAGGATGCCTCAGATTGCTGAAAATAGAAATGAAACCATAGAAGAAGAAGATGAAGTTGCCACTTGTGCTGAAAGTAGAATCCTAAGAAATGGCAATGGAAGCAATAAATGTTATATGCCCAGTTTCACAAGTGACTTCTGGGACAGTTCTTCATTTACTGTCCAAAAGCCAGCCAGTGACAGTAATGATTTCATGTTTTCTACTTCTGATGCTTTGGAATCTCAGCATGCAGAATTTGGGTATCAGAATCCTGGTTTGACTCATCAATTGAGTTTGCTCAATTCTTCTACTAAGATGGATAACATGGAGAGGTTTATGCGAATTCAAGGATCTGTTCCATGTAAAATTAGAGCCAAAAGAGGGTTTGCAACTCACCCAAGAAGCATCGCAGAGAGGGTAAGAAGAACAAGGATTAGTGAAAGAATAAAGAAGCTACAAGAACTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGATTATATTAAAGACCTGCAAAAACAAGTTAAGATTCTCAGAGATACTAGGGCAAAGTGCAGATGCTCAAGTATTCAGAAGCAGTACTCATAA 1206 0.4154 MDSGNGHPQQQRCHYQQSSGLLRYRSAPSSLLTSIAESSHGCADQMEEACRGLDPQHQQNRDVPSLGSEMEAMLAKLVSSSNNGWRNPNVNVKQEGEEAGDSVFCHDGPESDKLIHHSQELQDFPNNSFSSVMMINMDLDASNQSKMASGNCSNLLMRQRSSPAGFFSNFSVRSGFAALGEQATTSSSGLNGALTFSSRPSSCPRRMPQIAENRNETIEEEDEVATCAESRILRNGNGSNKCYMPSFTSDFWDSSSFTVQKPASDSNDFMFSTSDALESQHAEFGYQNPGLTHQLSLLNSSTKMDNMERFMRIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQELFPKSDKQTSTADMLDLAVDYIKDLQKQVKILRDTRAKCRCSSIQKQYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1387 401 MobiDBLite consensus disorder prediction 79 100 - -
Dere08g1387 401 FunFam Transcription factor bHLH130 family 328 398 - -
Dere08g1387 401 Pfam Helix-loop-helix DNA-binding domain 333 378 IPR011598 GO:0046983
Dere08g1387 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Dere08g1387 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 392 IPR036638 GO:0046983
Dere08g1387 401 Gene3D - 329 399 IPR036638 GO:0046983
Dere08g1387 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 391 - -
Dere08g1387 401 SMART finulus 333 383 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1387 Dere-ChrDere08 18215264 18218414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1387 9 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.333 2.35e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g1387 HLH 1.6e-10 No_clan