Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1386 ATGTACAAAGCTGCCTCAGCTTCGGTTGGTGCTTTATGCCTTTTTGTTTTCTTGTTCTTGCTTGCTCCTTCCTCGCACCAGAGAGCGTCTCCGCTTATGCGTTATACCGATCGACGTCTATTTGGAAGAAAATCAGGTTTTCGCCGATTAATCCTAATCCACGAAGAAGGCGATTTGTGTGTTGCTGTAAACTGCATTATTACATTTAGCTGTCTGCTGATGGACGGAGTGCCTCCAAGCCTTTTTGTTAATGATGGTTCATTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGATGAAGAGAGAAAAATTAGAGGAGCCTAAACCAATTAAAATTGTTTCAGGGTCTTTGACTCCTAATCTCTCTATTAGTAAAAAATCCTCTGTAGACTTTAAGGCTAATGATACACGGAAAACTTCCCAGGCTGGTGCTGGTGGCAAACTTGCATTCAGTTTAAAACAAAAGTCAAAGCTAGTGCCGCCACCTATTAAGTTGAGTGTTGATGATGATGAAGAAGAAACTGATGGTAGCAATATTTCAAGTGGTGCACCTCTAAAACGACAAAAGTTGGGGCAGGATGGTGGCATTGAGCAATCATCAAGAGACTCTGATGGTGCACCTTCTTCCCCAAGTGATCCTACAGTGAAGAAAGTCGCTGAGAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAAGATGTTACACGTCAAAAAAATCCTGGGGATACAGCTTTCAAATTTTTATTTGATGAGAAATGCGCTGATTACAAATATTATGAATATCGGCTAGCTCAAGAGGAAAGGGCTCTAGCGCAGCCCAGGGAGTCACAGACATCTCGTAACGGGGCTACAAGCACCTCATCTTCCAGACTATCAAATGTTCCTCAGAGATCATCCCAGCAGCATTACTCTTACCAAATCCCTGCATCTGCTTTATATGAAAGTTCTGAAGATCATAGAGTTTATGGATCTTCAAGTCAACCAGCATCTGCAGGAAGTACTGGCGAAACTGGTGGATCATCAAATGCTGACTCTTTAACACTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAGGAGAAGATGAAACAACCTAAGCAATCTAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTCTTCGAAAAAAGGTCATCACATGGGTGATTATATTCCCCAAGAAGAACTAGAGAAGTTCTTAGCTAACTGTAACGATGCAGCAGCACAGAAAGCTGCTAGGGAGGCTGCAGATAGGGCTAAAATTCAGGCTGATAATGTGGGTCACAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCAGCACCAGGAAGGGTATTTCAGATCCAATAATGGCAAATAATGTTAAGATGAACAATCTGGGGGTTGGTGCTAACAATCCTGGGGATGTGACTCCTGAAGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTCGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1536 0.4297 MYKAASASVGALCLFVFLFLLAPSSHQRASPLMRYTDRRLFGRKSGFRRLILIHEEGDLCVAVNCIITFSCLLMDGVPPSLFVNDGSFMERFKQLQQEQEMKREKLEEPKPIKIVSGSLTPNLSISKKSSVDFKANDTRKTSQAGAGGKLAFSLKQKSKLVPPPIKLSVDDDEEETDGSNISSGAPLKRQKLGQDGGIEQSSRDSDGAPSSPSDPTVKKVAEKLASFVAKHGRQFEDVTRQKNPGDTAFKFLFDEKCADYKYYEYRLAQEERALAQPRESQTSRNGATSTSSSRLSNVPQRSSQQHYSYQIPASALYESSEDHRVYGSSSQPASAGSTGETGGSSNADSLTLMEFYMKKAAQEEKMKQPKQSKDEMPPPASLQASSKKGHHMGDYIPQEELEKFLANCNDAAAQKAAREAADRAKIQADNVGHKLLSKMGWKEGEGLGSTRKGISDPIMANNVKMNNLGVGANNPGDVTPEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1386 511 MobiDBLite consensus disorder prediction 320 347 - -
Dere08g1386 511 MobiDBLite consensus disorder prediction 195 212 - -
Dere08g1386 511 MobiDBLite consensus disorder prediction 163 222 - -
Dere08g1386 511 SUPERFAMILY Surp module (SWAP domain) 211 272 IPR035967 GO:0003723|GO:0006396
Dere08g1386 511 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 79 511 IPR040169 -
Dere08g1386 511 Pfam G-patch domain 429 472 IPR000467 GO:0003676
Dere08g1386 511 Pfam Surp module 220 269 IPR000061 GO:0003723|GO:0006396
Dere08g1386 511 Gene3D Surp module 201 274 IPR035967 GO:0003723|GO:0006396
Dere08g1386 511 MobiDBLite consensus disorder prediction 361 390 - -
Dere08g1386 511 ProSiteProfiles SURP motif repeat profile. 220 263 IPR000061 GO:0003723|GO:0006396
Dere08g1386 511 ProSiteProfiles G-patch domain profile. 428 475 IPR000467 GO:0003676
Dere08g1386 511 MobiDBLite consensus disorder prediction 275 308 - -
Dere08g1386 511 SMART surpneu2 218 272 IPR000061 GO:0003723|GO:0006396
Dere08g1386 511 SMART G-patch_5 426 473 IPR000467 GO:0003676
Dere08g1386 511 MobiDBLite consensus disorder prediction 323 347 - -
Dere08g1386 511 MobiDBLite consensus disorder prediction 273 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1386 Dere-ChrDere08 18192604 18197949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1386 424 484 C2H2 Transcription Factor Family AT5G26610 43.548 8.79e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1386 08 18192604 18197949 Dere08g1386 08 18192604 18197949 ECH