Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1383 ATGGCTCAGAAGACTGAGAAGAAGGAAGAGACGGAGTTCAAGGTTCCCGAAACCATAATCCCCTGCGTCAACAACTGCGGCGTCACCGGCAATCCCGCCACGAACAACATGTGCCAGAACTGCTTCAACGCCACCTCAACAACCACCTCCTCCTCCGCCGCCGCCGGGATTTCTGCACCTTCTAAATTTGCCGACGACAAGACTTGTAGATCTACCGCGACTCGTTCTCCTAAGAGATCCTGTCCTTGCGACGAGCCAACGCAAACGTCGGATCGATCGAAGCCGGACGAGGCGACGCCGTCCCAAGCAAAGCGGGTCGTGAACCGGTGCTCCGGATGCCGAAGGAAGGTCGGGTTGACCGGGTTCCGGTGCCGGTGCGGGGAGCTGTTCTGCGCCGAGCATAGGTACTCCGATCGCCATGATTGCAGCTACGACTACAAAGCCGCCGGACGCGAGGCGATCGCGAGGGAAAATCCGGTGGTCAAGGCTGCGAAGATCGTGAAAGTTTGA 510 0.5863 MAQKTEKKEETEFKVPETIIPCVNNCGVTGNPATNNMCQNCFNATSTTTSSSAAAGISAPSKFADDKTCRSTATRSPKRSCPCDEPTQTSDRSKPDEATPSQAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVKAAKIVKV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1383 169 SUPERFAMILY AN1-like Zinc finger 92 163 IPR035896 -
Dere08g1383 169 ProSiteProfiles Zinc finger AN1-type profile. 104 150 IPR000058 GO:0008270
Dere08g1383 169 FunFam Zinc finger AN1-type containing 6 84 165 - -
Dere08g1383 169 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
Dere08g1383 169 SMART A20_3 19 43 IPR002653 GO:0003677|GO:0008270
Dere08g1383 169 SMART AN1_Zf_4 110 147 IPR000058 GO:0008270
Dere08g1383 169 Gene3D - 84 165 IPR035896 -
Dere08g1383 169 MobiDBLite consensus disorder prediction 74 96 - -
Dere08g1383 169 Pfam AN1-like Zinc finger 110 147 IPR000058 GO:0008270
Dere08g1383 169 MobiDBLite consensus disorder prediction 61 101 - -
Dere08g1383 169 PANTHER AN1-TYPE ZINC FINGER PROTEIN 20 168 - -
Dere08g1383 169 Gene3D - 1 67 - -
Dere08g1383 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 55 - -
Dere08g1383 169 Pfam A20-like zinc finger 20 43 IPR002653 GO:0003677|GO:0008270
Dere08g1383 169 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1383 Dere-ChrDere08 18167006 18167515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1383 9 169 C2H2 Transcription Factor Family AT3G52800 38.953 6.92e-33 113