Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1379 ATGGCGCCGAAGCAGAGAATACCGAGGGTGAGCAGAAACCCTGAGTTGATAAGAGGGATTGGGAAGTACTCTAGGTCTGAGATGTACCACAAGAGGGGTCTCTGGGCAATCAAAGCCAAAAACGGGGGCGTGTTCCCTCGTCACGATCCCAAGCCCAAGCCTGAGGCTCCTGCTGAGAAACCCCCCAAATTTTACCCCGCTGATGATGTCAAGAAGCCTCTGGTCAACAAGCGCAAGCCGAAGCCCACTAAACTCAGGGCTAGTATTACTCCCGGGACTGTGCTGATTCTTCTTGCTGGGAGATTCAAGGGAAAGAGAGTAGTATTTCTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTTACTGGTCCATTTAAAATTAATGGAGTTCCTTTGAGACGTGTAAGCCAATCTTATGTCATTGGCACCTCCACAAAGGTTGATATATCTGGAGTTAATGTTGATAAGTTTGATGACAAGTATTTTGCCAAGAAAGTTGAGAAGAAGAAGAAGAAGAAGGGAGAAGGGGAGTTTTTTGAGGCTGAAAAGGAGGAGAAAAATGAGATCCCCCAAGAGAAAAAAGATGACCAGAAAACTGTGGATTCTGCATTGTTAAAAGCCATCGAGAGCGTTCCAGACTTGAAGGTTTATTTGGGTGCAAGGTTTTCTCTTAAGGCAGGCATGAAGCCTCATGAACTAGTCTTTTAA 705 0.4567 MAPKQRIPRVSRNPELIRGIGKYSRSEMYHKRGLWAIKAKNGGVFPRHDPKPKPEAPAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVSQSYVIGTSTKVDISGVNVDKFDDKYFAKKVEKKKKKKGEGEFFEAEKEEKNEIPQEKKDDQKTVDSALLKAIESVPDLKVYLGARFSLKAGMKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1379 234 Gene3D - 87 172 IPR014722 -
Dere08g1379 234 FunFam 60S ribosomal protein L6 87 172 - -
Dere08g1379 234 MobiDBLite consensus disorder prediction 176 196 - -
Dere08g1379 234 Pfam Ribosomal protein L6e 126 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Dere08g1379 234 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Dere08g1379 234 CDD KOW_RPL6 81 234 IPR041997 -
Dere08g1379 234 PANTHER 60S RIBOSOMAL PROTEIN L6 7 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Dere08g1379 234 MobiDBLite consensus disorder prediction 44 76 - -
Dere08g1379 234 SUPERFAMILY Translation proteins SH3-like domain 87 178 IPR008991 -
Dere08g1379 234 MobiDBLite consensus disorder prediction 41 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1379 Dere-ChrDere08 18107372 18109296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1379 1 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 83.761 1.49e-125 353