Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1362 ATGGAAAACAACTCCAACCCAGAAAATTCACAGCAAAAGTGGGGGACGTGGGAGGAGCTCTTGCTTGCCTGCGCCGTCAAGCGCCATGGCTCCAAGGATTGGGACGCCGTCGCTATGGAGGTCCAGACCCGAACCACCCTCCCGCAACTCCTCACCACCGCCCACCACTGCGAGCAGAAATTTCTGGATCTCAGACGCCGATTCGCTGCCAAGCGCAACGACGAGGTTCCAGACACCATCGTGGTCGGTGACAACGTCGATCACGTCCCGTGGCTCGACGAGTTGAGGAAGCTCCGCGTCGCCGAGCTCCAGCAAGCGGTCCAGCGCTCCGACGTCTCCATTCTGTCGTTGCAGCTGAAGGTGAAGAGGTTGGAGGACGAGAGAGGGAGGAGCTTGAAGGAGAACGTCGGAGAACAAGAAGACAAACCGGATCTGGCCGGCTCCGGCGAAATGAAACTGCAAAACGACAAAAGTAGCGGACAAGAAAAAGCTCCTGAGCCGGCGAGTTCCGAACTGACGAAGCGGCTCGACGAGGATCGTAATAGTAAGCAACCAACCGGTGACGAATCCGACCGGGAAAACCAGTCCGTTAACGAGTCCAACTCGACCGTTTCCGTTGGGAAAACCGGGGAGGGAGAAGTGAAGCTAGAACCGAACCCGGCCCAGGCCGGTCCGAAAGAACCGGACGCGGTCGAGAGGAAGGCCAATCCATTCGGAGAAGAATCCAACAACGGAAGCTACGATGAGGCGGCGAAAGTGCCGCCGTGCGATTCACTACCTCCAAGTGAGGAGAGGAAGGTGGAGGACTCGTCCGAGTTGCGAGACTCGGTGACTCACTCGAGGGATGGTGGTGGCGAGGGAGGGACGAGGGAGAGCAGTGAGGTGCAGAGCTCGGCGAGTTTGACGAGGAAGAGGAAGCCACGGAGGAGAAAGGAGGAGGAGGAGGAGGAGCCGCCGGAGAATGACGAGGTGGCCGTGAAATCACAGCCGTTGATTGGTGTGTTGGAGTTAATCAAAGGTCACGATCATAGCTCATTGTTCGAGCGCCGTCTTGAGAGCCAGGAATCAGATCAATACAAGAACATAGTACGACAGCACATGGATTTTGAAACCATACATCGGCAACTCCGAAACGGCACCTATTCCTGCTGCTCTCAAGCCTTCTTCCGTGATCTCCTCCTCCTCTTCACCAACGCCACCGTTTTCTTCCCCAAGGATTCCACGGAATTACGCACTGCAAAGCAGTTGTGCCGCCTTGTCTCCGCGGAGCTCAAGCACCACGTCCCAACGATCCAACCTGACCCATTTCCCACAAATTTAGATTCACTCCCACCAAACCGATCATCATCATCTAAATCAAGGCCTGATTCTCTGCTTTCCAAACACAAAGCTGCTGCTCCTATATTGGTCTGCCGGAAACGCAGTTCAATCTCAGCTAAACCTTCCTCCTCCTCCGCTACCTTTGGCCAAAAGGGTGACCTTCCAGGCCATGAGAAAAGAAAGCCAGCTTCAGATACAAAGCCAGCATTGGAGCCACCATCTTCTTCTGATACAGATGATGAACCTCCCAAGAAAAAGGAAAAGCCAATCACTGGAGAAAGAAGCCTGAGAAGAAGTAACAAAAGCATCAGTGGCAACCCCAGCAAGAAGGCAGGCACGGCCAGCAAGCCACCAGAGACTCCAAAATCTGATAAAAGCAAGGCAGAGGGTTCGGATAAAAAGAGGAGTGCAGCCGCTGATTTCTTGAAAAGGATAAAGCGAAATGCTCCGACTGACGTATTAAAAAGTGGTAGTGGTGGTGGTAATAGTAGTAGCAGAGGCGGGGTTAGTGGAAAAGACCAGAAGAAGATGATCAGTGGTGGAAAGGGGGAGAAAGGGAAAGAAAAAGCTTCCAGGCACGGTGGTGGCAGTAGCAGCTCCGGTGATAAAAAGAATGAGAATGATAATAGTAGTCAATCAAAGAGGAATGTTGGGAGGCCTCCAAAGAAGGTGGCAGAAACAAGTAATGCACCTTATGCCAAGCGTGGAAGGGAGAGTGGTGGGAAGGATAAACGGCCCAAGAAGCGTTCTAAGAAGTAA 2079 0.5325 MENNSNPENSQQKWGTWEELLLACAVKRHGSKDWDAVAMEVQTRTTLPQLLTTAHHCEQKFLDLRRRFAAKRNDEVPDTIVVGDNVDHVPWLDELRKLRVAELQQAVQRSDVSILSLQLKVKRLEDERGRSLKENVGEQEDKPDLAGSGEMKLQNDKSSGQEKAPEPASSELTKRLDEDRNSKQPTGDESDRENQSVNESNSTVSVGKTGEGEVKLEPNPAQAGPKEPDAVERKANPFGEESNNGSYDEAAKVPPCDSLPPSEERKVEDSSELRDSVTHSRDGGGEGGTRESSEVQSSASLTRKRKPRRRKEEEEEEPPENDEVAVKSQPLIGVLELIKGHDHSSLFERRLESQESDQYKNIVRQHMDFETIHRQLRNGTYSCCSQAFFRDLLLLFTNATVFFPKDSTELRTAKQLCRLVSAELKHHVPTIQPDPFPTNLDSLPPNRSSSSKSRPDSLLSKHKAAAPILVCRKRSSISAKPSSSSATFGQKGDLPGHEKRKPASDTKPALEPPSSSDTDDEPPKKKEKPITGERSLRRSNKSISGNPSKKAGTASKPPETPKSDKSKAEGSDKKRSAAADFLKRIKRNAPTDVLKSGSGGGNSSSRGGVSGKDQKKMISGGKGEKGKEKASRHGGGSSSSGDKKNENDNSSQSKRNVGRPPKKVAETSNAPYAKRGRESGGKDKRPKKRSKK 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1362 692 MobiDBLite consensus disorder prediction 259 288 - -
Dere08g1362 692 ProSiteProfiles Bromodomain profile. 339 410 IPR001487 GO:0005515
Dere08g1362 692 MobiDBLite consensus disorder prediction 130 147 - -
Dere08g1362 692 CDD Bromodomain 334 416 - -
Dere08g1362 692 SMART bromo_6 107 429 IPR001487 GO:0005515
Dere08g1362 692 MobiDBLite consensus disorder prediction 152 166 - -
Dere08g1362 692 SUPERFAMILY Bromodomain 323 431 IPR036427 GO:0005515
Dere08g1362 692 Pfam Bromodomain 334 414 IPR001487 GO:0005515
Dere08g1362 692 MobiDBLite consensus disorder prediction 560 590 - -
Dere08g1362 692 Gene3D - 4 63 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 435 455 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 130 328 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 595 610 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 633 657 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 536 553 - -
Dere08g1362 692 SUPERFAMILY Homeodomain-like 3 46 IPR009057 -
Dere08g1362 692 SMART sant 10 67 IPR001005 -
Dere08g1362 692 MobiDBLite consensus disorder prediction 429 692 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 617 632 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 476 490 - -
Dere08g1362 692 CDD SANT 13 45 IPR001005 -
Dere08g1362 692 Gene3D - 292 433 IPR036427 GO:0005515
Dere08g1362 692 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 3 692 - -
Dere08g1362 692 MobiDBLite consensus disorder prediction 517 535 - -
Dere08g1362 692 Pfam Myb-like DNA-binding domain 12 46 IPR001005 -
Dere08g1362 692 MobiDBLite consensus disorder prediction 168 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1362 Dere-ChrDere08 17852276 17856296 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere08g1362 Bromodomain 1e-10 No_clan