Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1353 ATGGAGCTTGGTTTGAGTTTGGGAGATCATGCTTCAAAGCCATCTGAAGCTTCCAACCTTCTGGGATTAGGCTTCAACACCACTTTATCAATTGGTCCCATTTGTACCAAACCATCAAATCAACAGCAACAAGAAGAAAAAGAAGTGGGAAAAAGGCAGAAGCAAATACAGAGTATTGAAGGCTACGAAGATAGAACTGAATATGTACAGCTTGATCTTCTCCCTCGCACACCAGTCGTTGTTTCTCGCACTAACCCACCGTCCCAAATCTCATTTCCATGGTCTCCCTCCGAAAATGGGAGTTCTTCAAGGGGCGTGGACGTGAACAGGTTACCGCCGACGGCGGTGGCAGCGGCGGCGGAAGAGGATGAGGCGGCGTTGTCATCGTCTCCAAACAGCGCAGCATCGTCGTTTCAGATGGATCTCTGTATTTATAACAGAGGAGGGAGTAGTATTAGCGGTTGCAAGAGGGATTTTGATGGAGAAGTTTATTATGATCAAAAGGCTGGTTCTTCAAGAGCAAGCGATGAAGATGACAACGTTGGTAGTACGAGGAAGAAGCTAAGGCTCTCTAAGGAACAATCTGCTTTCCTCGAAGAGAGCTTCAAAGAACACAGTACTCTTAACCCGAAACAGAAGCTTGCTCTTGCAAAACAGCTCAATCTTCGTCCTCGCCAAGTTGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAGGTAGACTGCGAGTACTTGAAGAGGTGTTGTGAGACACTAACTGAAGAGAACAGAAGGCTTCACAAGGAGCTTCAAGAACTGAGGGCTTTGAAGACTAATTCAAACCCATTCTACATGCAATTACCAGCCACAACCTTGACCATGTGTCCATCTTGTGAGCGAGTCGCCACCAACAATTCCACCTCCACTACCACCACCACTACTTCCTCTGCAACTCCTTCTGCTACCAAGGTTATTAATAATGGAGCCTCCATTGAACCCACCACATCAAAACCCATTGGATTCCCTCTAGGCAAGCCCAAGTTCCATCCATTTGCTCACCACTCCACACCATCTTAA 1071 0.4678 MELGLSLGDHASKPSEASNLLGLGFNTTLSIGPICTKPSNQQQQEEKEVGKRQKQIQSIEGYEDRTEYVQLDLLPRTPVVVSRTNPPSQISFPWSPSENGSSSRGVDVNRLPPTAVAAAAEEDEAALSSSPNSAASSFQMDLCIYNRGGSSISGCKRDFDGEVYYDQKAGSSRASDEDDNVGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSNPFYMQLPATTLTMCPSCERVATNNSTSTTTTTTSSATPSATKVINNGASIEPTTSKPIGFPLGKPKFHPFAHHSTPS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1353 356 Pfam Homeobox associated leucine zipper 241 275 IPR003106 GO:0006355|GO:0043565
Dere08g1353 356 ProSitePatterns 'Homeobox' domain signature. 216 239 IPR017970 GO:0000981|GO:0006355
Dere08g1353 356 Gene3D - 189 239 - -
Dere08g1353 356 SMART halz 241 285 IPR003106 GO:0006355|GO:0043565
Dere08g1353 356 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 317 - -
Dere08g1353 356 SMART HOX_1 183 245 IPR001356 GO:0003677
Dere08g1353 356 SUPERFAMILY Homeodomain-like 171 242 IPR009057 -
Dere08g1353 356 Pfam HD-ZIP protein N terminus 19 138 IPR006712 GO:0005634
Dere08g1353 356 MobiDBLite consensus disorder prediction 82 109 - -
Dere08g1353 356 ProSiteProfiles 'Homeobox' domain profile. 181 241 IPR001356 GO:0003677
Dere08g1353 356 CDD bZIP 234 273 - -
Dere08g1353 356 MobiDBLite consensus disorder prediction 82 108 - -
Dere08g1353 356 CDD homeodomain 185 242 IPR001356 GO:0003677
Dere08g1353 356 MobiDBLite consensus disorder prediction 32 61 - -
Dere08g1353 356 Pfam Homeodomain 185 239 IPR001356 GO:0003677
Dere08g1353 356 MobiDBLite consensus disorder prediction 44 61 - -
Dere08g1353 356 Coils Coil 254 277 - -
Dere08g1353 356 FunFam Homeobox-leucine zipper protein 18 170 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1353 Dere-ChrDere08 17709022 17710507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1353 104 298 Homeobox Transcription Factor Family AT3G60390 57.407 5.19e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere08g1353 HD-ZIP_N 2.7e-06 No_clan