Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1352 ATGGAACTTGATTTGAACGAGGAGCCGTTGGACCAAACCCCTACTTCGGTGATTGGATTTGATTCTATATTGGATGATCTAGAATCTACACATGGACATATAGAAGAGCGTATTAGGCACCTTGAAGCAGTAACCTTGAGAGCTAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCGGTTCAAATAAATAACATCATGGCGGATATAATGATGACACCTACTGCCCAGAATGAACCCAGGATGCCTCTGGAAGATGTTGGTATTGCTGTCCAAGAAAGAACAGTCGTCTTAGCAGAATTGACAACAACTAATGCTCAAAATGAGGGCAGAATGCCCGGGGAAGGGGTCGGTGCAGTCCAAGAAGGAACTGTCAACAATAGGAAAACGGGCAAAAGAAACAGTTCCCATTTAGTTGCTCAAGCGTTGGGGATGGATCCATATATTGATGAGACAGAGAGCAACACTGGCAATTTTTTCGATTGTAAGATCTGCCTGGACATGGCAAGTGATCCTATTTTGACATGCTGCGGTCATTTATTCTGTTGGCCGTGCTTCTATCAGGTGTCATATGCTTATTCAACTGTAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCGCTGAGACAGGCATTATTCCAATTTATGGCAATCAAGATGTATCTAGCAACCGGGAGTTGGAATTAAAGAAAAGTGGTTTGTCTGTTCCTCCTCGGCCCCAAGCACGTAGAATTGAGAGTCTTAGACAGCAGCTCATAAGCCGGGGAGCATCTTCTTCTACAATCCAGGAGATTAGGCGGTTTATTGGTGCAGCTGCAGCTGACAGAACTCGTTTTTCAGTCAATCAATTTCACCACACTCAGTCCCAAGCATTACATGGCATGGAGACCGAAAACAGTCAACATAATCGTTCACGTCTACTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGAGATCTTGAAGCATATATTCATCCTCAACAACCTCAAACCGTGGGAAGCTCTAGAGAGCTACTTGATCCTCTTCCTCACAATAGAGATTCACCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACATACTCCAGATGTTGCTGCTACCAATTCCACGTCAATAGCCTCTGTTTCTCCTTTAGCTATGAATGATGATGCTACAGCTGTTATAGATTCGGGAATCCAGACAAGGGTTGGCAGTGTACAGGTTAGTTCAATGGAGCCTTCTTCATCTTCCAGTAGAACTGTTGTTTTAGGACTTCCGGACCTTTACAATAGATCTTCAAATGGGCGCAGAAGGAGAAGGTTAAGAAGATGA 1371 0.4413 MELDLNEEPLDQTPTSVIGFDSILDDLESTHGHIEERIRHLEAVTLRARQRQRWRRGHDSVQINNIMADIMMTPTAQNEPRMPLEDVGIAVQERTVVLAELTTTNAQNEGRMPGEGVGAVQEGTVNNRKTGKRNSSHLVAQALGMDPYIDETESNTGNFFDCKICLDMASDPILTCCGHLFCWPCFYQVSYAYSTVKECPVCKGEVAETGIIPIYGNQDVSSNRELELKKSGLSVPPRPQARRIESLRQQLISRGASSSTIQEIRRFIGAAAADRTRFSVNQFHHTQSQALHGMETENSQHNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIHPQQPQTVGSSRELLDPLPHNRDSPSSIAATNQSGRHTPDVAATNSTSIASVSPLAMNDDATAVIDSGIQTRVGSVQVSSMEPSSSSSRTVVLGLPDLYNRSSNGRRRRRLRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1352 456 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
Dere08g1352 456 SMART ring_2 162 202 IPR001841 -
Dere08g1352 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 129 301 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere08g1352 456 SUPERFAMILY RING/U-box 153 211 - -
Dere08g1352 456 MobiDBLite consensus disorder prediction 367 384 - -
Dere08g1352 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 263 IPR013083 -
Dere08g1352 456 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Dere08g1352 456 Coils Coil 24 44 - -
Dere08g1352 456 MobiDBLite consensus disorder prediction 345 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1352 Dere-ChrDere08 17690797 17692167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1352 149 268 C3H Transcription Factor Family AT3G58030 48.760 2.36e-32 126