Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1338 ATGGGGCATAGTTCAAGGAAGAAGAAGCGTGGAGGAGGAAGTGGGAGGAAAATTAAGGGAAGAGCACCTTTGAATGATCACGTATCTCAATCCAGTGGTGATGATGATGAACTTTCGGAAGAAATTACTGCTTTATGTGCAATTTTCGAAGAGGACTGCAAGATTCTTCCTGGATCACCTCCTCAGATAGTTATTAAGCTCAGACCTTATTCAAAGGACATGGGGTATGAGGATGTAGATGTTTCTGCTGTTCTTGTTGTTAGGTGCCTACCTGGGTATCCTTTCAAGTGTCCAAAGTTGCAAATTATTCCTGAGAATGGTTTATCAGAAAGTGATGCTGATAAACTTTTGTCTCTCCTCCATGATCAGGCTAATTTAAATGCTAGGGAGGGAAGAGTAATGATCTTTAATTTGGTGGAGGCTGCCCAAGAATTTATGTCTGGAATTGAGCCAGCTGGGAAATCAAACGACTCTAAGACTTTGCTCTCAACTATGGAAAGCAATGAAGAATTGTTTCTTAAGGATATGGCAACTTCAAATAGGAGTTCTTCTTTTGTTTATGGTTTCATAGATCTCTTCAGTGGCTATGGAGAATCATGGAATTGGGGTTTCGGAATGGATGAAACTAGTGAGAAAACTTCTTCTGTCCCACCCTCGAAGATAGATGCCTCAGAACATGCTTATGAGACTGAGGAAAATAAAGATGTTAGAAAGTCAGAGCCACTTATAATGCAAGAAACAAAGCAAGGCCCATTTGTTTCTCCAACTGCCAAATTGGGTACCTTGCAGGAAAATAGTGATGAAAGCAACAAGAGCTTGCCTTCATCTTATTCAAGTAGATCTCAAGCAGAGGAACTCATAGGGAATGGCAATGAAAGTGAGAAAAAGGATCTTATCCTTGATGAGTATACATCAGAGGATAATGAAGAACATATTTATGCAACAGTGTCTTCAGAGTCTCAGTCTTCTGCTTCTATGGCTCATCATCAAGCATCTCAAACAGTTGAAAGGGATCTGATAATGACTGACCCTAATCCTTTTGAGTTCTATTCTCAGGTCATCTCTGATTGGGCAAGGGACATGGCATCTGAACCACCTTCCCTTTTTAACAAAACCTTCAGTCATGTTTTCCAGAAACATCTGGTATCATCCAGAGTATCTCACTTTTGGAAACCTCCTGACCTTGGAGGCCCAACTACGGTTCCCCTAAGTTCTCGATATATGAATGACTTTGAGGAGCTCCGGCCTCTTGGTCATGGTGGGTTTGGCCATGTTGTGTTGTGCAAAAACAAACTTGATGGAAGACAGTATGCAGTAAAGAAAATTCGCATAAAGGACAAAAGCATGCCTGTAAATGACAGAATACTAAGGGAAGTGGCTACTCTTTCTCGTTTGCAGCATCAGCATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTGCTGATTCTTATGGTGATGCTGCTTGGGGTTCAAGGACTGCAGTGACCTCCACTTTCAGCTTTAAAGCTGCTAGCTCCCCAGATGCCCTTGGGCATGATAATCAGCTCGAATCAACATACCTTTACATTCAAATGGAGTACTGCCCCAGGACCCTCCGCCAGGTATTTGAATCATACACTCATTTTGACAAAGAACTAGCATGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGGACAAGGAATAATACATCGGGATTTGACACCAAATAACATATTTTTTGATGCTCGCAATGATATCAAAATTGGTGATTTTGGTCTTGCCAAATTTTTGAAGTTGGAGCAGCTGGATCAAGATCCAGGACATACTGCTGAAACAACTGGAGTTTCCATCGATGGCACTGGACAAGTTGGCACCTATTTCTATACGGCCCCTGAAATTGAGCAAGGATGGCCTAAGATTGATGAAAAGGCTGATATGTACAGCCTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCTTTTGGGACAGCGATGGAGAGAAATGTTGTATTATCTGATCTGAAACAGAAAGGAGAACTACCTCCTGCTTGGGTTGCTGAGTTTCCAGAACAGGCAGCCTTGCTGCGGCACTTAATGTCTCCAAGTCCATCTGATCGTCCTTCTGCCACTGAACTTTTACTGCACGTGTTTCCTCCAAAAATGGAGTCTGAGTTATTAGATGGCAAGTTATTAAGACATTTGTAG 2202 0.421 MGHSSRKKKRGGGSGRKIKGRAPLNDHVSQSSGDDDELSEEITALCAIFEEDCKILPGSPPQIVIKLRPYSKDMGYEDVDVSAVLVVRCLPGYPFKCPKLQIIPENGLSESDADKLLSLLHDQANLNAREGRVMIFNLVEAAQEFMSGIEPAGKSNDSKTLLSTMESNEELFLKDMATSNRSSSFVYGFIDLFSGYGESWNWGFGMDETSEKTSSVPPSKIDASEHAYETEENKDVRKSEPLIMQETKQGPFVSPTAKLGTLQENSDESNKSLPSSYSSRSQAEELIGNGNESEKKDLILDEYTSEDNEEHIYATVSSESQSSASMAHHQASQTVERDLIMTDPNPFEFYSQVISDWARDMASEPPSLFNKTFSHVFQKHLVSSRVSHFWKPPDLGGPTTVPLSSRYMNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRIKDKSMPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADSYGDAAWGSRTAVTSTFSFKAASSPDALGHDNQLESTYLYIQMEYCPRTLRQVFESYTHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDPGHTAETTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERNVVLSDLKQKGELPPAWVAEFPEQAALLRHLMSPSPSDRPSATELLLHVFPPKMESELLDGKLLRHL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1338 733 Gene3D Ubiquitin Conjugating Enzyme 28 158 IPR016135 -
Dere08g1338 733 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Dere08g1338 733 ProSitePatterns Tyrosine protein kinases specific active-site signature. 568 580 IPR008266 GO:0004672|GO:0006468
Dere08g1338 733 MobiDBLite consensus disorder prediction 208 296 - -
Dere08g1338 733 Pfam RWD domain 37 145 IPR006575 GO:0005515
Dere08g1338 733 ProSitePatterns Protein kinases ATP-binding region signature. 417 441 IPR017441 GO:0005524
Dere08g1338 733 SUPERFAMILY Protein kinase-like (PK-like) 407 717 IPR011009 -
Dere08g1338 733 MobiDBLite consensus disorder prediction 224 242 - -
Dere08g1338 733 MobiDBLite consensus disorder prediction 249 288 - -
Dere08g1338 733 MobiDBLite consensus disorder prediction 1 36 - -
Dere08g1338 733 MobiDBLite consensus disorder prediction 1 16 - -
Dere08g1338 733 CDD STKc_EIF2AK4_GCN2_rpt2 404 714 - -
Dere08g1338 733 FunFam eIF-2-alpha kinase GCN2 28 156 - -
Dere08g1338 733 FunFam eIF-2-alpha kinase GCN2 399 529 - -
Dere08g1338 733 Pfam Protein kinase domain 411 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1338 733 SMART RWD2001b 40 149 IPR006575 GO:0005515
Dere08g1338 733 Gene3D Phosphorylase Kinase; domain 1 399 529 - -
Dere08g1338 733 SUPERFAMILY UBC-like 35 146 IPR016135 -
Dere08g1338 733 ProSiteProfiles Protein kinase domain profile. 411 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1338 733 Gene3D Transferase(Phosphotransferase) domain 1 532 723 - -
Dere08g1338 733 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 62 721 - -
Dere08g1338 733 FunFam eIF-2-alpha kinase GCN2 533 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1338 Dere-ChrDere08 17514472 17524101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1338 411 716 MAP Kinase Kinase Kinase AT1G63700 26.433 8.10e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Dere08g1338 Pkinase 6.2e-50 CL0016