Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1331 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCAGCAGCAACGGTGATCTGTTGTGCAGATGAGGCAGCCTTGTGTGCTAGGTGTGACATCCAAGTTCATGCTGCCAACAAGCTTGCAAGCAAGCACCACAGGCTCCTCCTTCAGTGCCTTCCAAACAAGCTTCCCAGATGCGATATATGCCTAGATAAGGCAGGTTTGATATTTTGTGTAGAAGACAGAGCAGTGTTGTGCGAGGATTGTGATGAAGCAACTCACTCTGCCAATACCCTTTCAGCAAATCACCAGCGTTTCCTTGCCACTGGTATCAGACTTGCCTTGAATTCTAATTCTAAACGTAGAAGCAACCAAGAGATGGAGATGAAGCCACAACAACATTCTGCGAAGAGTCCCTCTCAGCCTCAGCTTCACCCTCAGGCGGTGCCTGCCTCCACATCCTCTTGGACTGTTGATGACTTCTTGTACTTCACAGACTTTGTATCGCCTCTGCCTCAGCCTCACAAGGCTCTTGTGAAGAATTCGCTTGAGTTTGAGGAGCTGGAATGGCTGGCAGATGTGGGTCTGTTTGGTGATCACTTTCCAGATTCTGAGGGACCCTTTGCTGCAGCACAGGTCCCTCAGCTTCCACTGACACAAAGTACCAATGTTAACCCCTATGTGTCTCCCATTCACAAGAAGCCTAGGATTCAAGTTCCACAGGATGATGATGATGATGACTACTTCATTGTGCCTGATCTTGGCTGA 741 0.4818 MKIQCDVCEKAAATVICCADEAALCARCDIQVHAANKLASKHHRLLLQCLPNKLPRCDICLDKAGLIFCVEDRAVLCEDCDEATHSANTLSANHQRFLATGIRLALNSNSKRRSNQEMEMKPQQHSAKSPSQPQLHPQAVPASTSSWTVDDFLYFTDFVSPLPQPHKALVKNSLEFEELEWLADVGLFGDHFPDSEGPFAAAQVPQLPLTQSTNVNPYVSPIHKKPRIQVPQDDDDDDYFIVPDLG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1331 246 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dere08g1331 246 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dere08g1331 246 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere08g1331 246 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 245 - -
Dere08g1331 246 CDD Bbox1_BBX-like 5 47 - -
Dere08g1331 246 Gene3D Classic Zinc Finger 1 93 - -
Dere08g1331 246 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Dere08g1331 246 MobiDBLite consensus disorder prediction 120 141 - -
Dere08g1331 246 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere08g1331 246 MobiDBLite consensus disorder prediction 110 141 - -
Dere08g1331 246 CDD Bbox1_BBX-like 57 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1331 Dere-ChrDere08 17474042 17475453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1331 1 160 Orphan Transcription Factor Family AT1G06040 58.182 5.47e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere08g1331 zf-B_box 1.4e-06 No_clan