Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1326 ATGCCGCTTCCGACGAAATCAATCAAGGCTGCTCAGGAAGGCGGTGGCACCGTCATGGACTTCGAAGATCCTGATGCCCCATCCAACAATCTATGGGTTGGAAATTTGTCGCCCGAGGTTACCGAGTCCGATCTTATGGCCCTGTTCGCCCAATACGGCGCTCTTGATAGCGTCACGTCCTATTCCTCTAGGAGTTACGGCTTCGTGTTTTTCAAGCGCATCGAAGATGCTAAGGCTGCTAAGAACGCGTTACAAGGCACTGTTCTACGCGGAATTCCTATAAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACATCTTTGGGTGGGCGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTCGTAGATTTGGTAAAATTGAGGATTTTAAGTTCCTCAGAGACCGCAACACTGCATTTGTAGAATATTTCAATTTGGATGACGCAACTCAGGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGGGACCAAATTCGTGTCGACTTCCTGCGATCACAATCCTCAAAAAAAGATATGTTGCTTGATTATGGGCAGTTTCAGGGAAAAAGCATGGGCCCTACTGATTCCTACTCTGGTCAGAAAAGACCATTGCAGACACAACCTCCATTTGGGAGGAAGGGAGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTCGGTGAAATTGAGAGAATCAAGAGTTTCCCTTCAAGGCATTACTCGTTTGTGGAATTTAGGAGTGTGGATGAAGCTCGACGTGCCAAAGAGGGTCTCCAAGGCCGTCTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCTTTTACTCTGGAAGTAAAGGACCTAGACCTGACATGTTTGTAAGTGAGCATCCATTTCGACCATTACAGATGGATGTGTTTGGTCATAATCGTCCAATTGTTCCAAATAATTTTCCTGCACAGTTAGCACCTGGTGTTATTATCGGATCTAATGTACCGTTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAGCCTTTGATTTCAGGCAGTGAGTTTAATGATTTGGGAACAAACCAGAAATTTCAGGACGGTAGCTCGAAAAGTCAAATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCCCCAGGGATGCTTCCTTCTGCTCCAGGTGTCAGACCTCCTACTAGATCCTCATCTGGTGCATGGGATGTGCTTGACATGAACCAATTTCAGAGGGACTCTAAACGTTCAAGGATAGATGGTGCTTTACCTGTTGACGATGCTCCATTTCCTTTAAGGAATAATGTTGATGATCGTGGATTAGGACTAGAACAACCCTATGGGATGGATCCAGTTATTGATGGCGGTTCTGGTCCATTTGTAAACATCCAAGGAAAGACTCACCTTGGGCCAGTGGGCACAAGGATTGCAGCTGGAGTAGCTGCTCCTGGTCAACCAGAAATTGATCACATATGGCGTGGGATTATTGCAAAAGGGGGAACACCTGTTTGTCAAGCAAGATGTGTCCCTATTGGAAAAGGGATCGGGACTGAACTTCCTGAAGTTGTTGATTGCTCAGCCAGGACAGGATTGGATATGCTCACGAAACACTATGCAGATGCAATTGGTTTTGATATCGTCTTCTTTCTACCAGATAGTGAAGATGATTTTGCGTCGTACACTGAATTTCTTCGCTACCTTGGTGCTAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGTACCACCCTATTTTTGGTACCTCCTTCTGATTTCTTAACAAAGGTTTTAAAAGTCACAGGGCCTGAACGTTTATATGGTGTGGTTCTTAAGTTTTCATCTGTGCCAAGTGGTACATCAATGCAACAACCATTGCTCTTATCTGTTCCTTCAACTCAATATATTGATAGGCAGCAGTTTCCTCCTTTGCAAGCAGAGTTTGGTCAGATTCCAGCAAAGGAGGAACAGATTTTGCCAATAGATTATAACAGATTGGTGCATGAGGAGTCTAAACTTCCTCCAAAACCGCTTTATCCAGCTACAAGTGGTCCCCCTTTAGTTCAGTCTGTACCCTCAGAGTATACTTCTAATAATACTGCTGTAGCAACCCAGCCTGGAGTTACATTAACTCCTGAGCTTATTGCCACTCTAGCCTCTTTAATTCCTGGAACTACTCAATCATCTGCTGCTGATGGTGCCAAGTCAGCTGTAGGCTCCTCAACTATGAAGCCTTCATTTCCTTCGGTTGCACCTACTGACGGAAACCAATCTCATTTATGGAAACAGGATAATCAAATTGCTGATCCGTCTAGTCATATACTTCAACCAGTGGGAAGTACATACTATCAGCCTTATTCACTATCATCTACTCATGGCCACCCCGGCCAAGTGGTTCCTGGCAGTTCTTATATCCAGGACTCTGCTGCCAACCTACAGCAGCAAGGTGCTGTCCCATCTAGACCCATGACTAATTTCTTGATACCTTCTCAGACTGGACAAGTAGCTGTATCACCCCAGGTGAATCAACAGTATCAGGTTGAAGTCTCCCCTGGCTCTCAGAAAGGCTACGGAGTGGTGCAGGGAACAGATGCCTCTGGTTTATATAATTCCCAGGCTTTTCAGCATCCCAATATGTCTATCTCCTCATCTAATCAAGTTCATGGTGCTAACCCTTCACAGCAACAAACTGCCATGCCATACTCAGCAGACAAAATGAACTCAGAGCTTCCAAATCAGCAATTTCAATCTGCTCTACTAGGAGCCAATCAGGGCACATCGGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACTCTACAGTTTGCTGCTAGTCTTCTTCTCCAAATACAGCAGCAGCAACAGCAAACCCAAGGAGGGCGTGGGCCTGGAAATCAACAATGA 2991 0.4504 MPLPTKSIKAAQEGGGTVMDFEDPDAPSNNLWVGNLSPEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRIEDAKAAKNALQGTVLRGIPIKIEFARPAKPCKHLWVGGISPAVTKEELEAEFRRFGKIEDFKFLRDRNTAFVEYFNLDDATQAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLDYGQFQGKSMGPTDSYSGQKRPLQTQPPFGRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGFYSGSKGPRPDMFVSEHPFRPLQMDVFGHNRPIVPNNFPAQLAPGVIIGSNVPLRPFGPQGSLEPLISGSEFNDLGTNQKFQDGSSKSQMGPNWKRPSPPAPGMLPSAPGVRPPTRSSSGAWDVLDMNQFQRDSKRSRIDGALPVDDAPFPLRNNVDDRGLGLEQPYGMDPVIDGGSGPFVNIQGKTHLGPVGTRIAAGVAAPGQPEIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFSSVPSGTSMQQPLLLSVPSTQYIDRQQFPPLQAEFGQIPAKEEQILPIDYNRLVHEESKLPPKPLYPATSGPPLVQSVPSEYTSNNTAVATQPGVTLTPELIATLASLIPGTTQSSAADGAKSAVGSSTMKPSFPSVAPTDGNQSHLWKQDNQIADPSSHILQPVGSTYYQPYSLSSTHGHPGQVVPGSSYIQDSAANLQQQGAVPSRPMTNFLIPSQTGQVAVSPQVNQQYQVEVSPGSQKGYGVVQGTDASGLYNSQAFQHPNMSISSSNQVHGANPSQQQTAMPYSADKMNSELPNQQFQSALLGANQGTSEVEADKNQRYQSTLQFAASLLLQIQQQQQQTQGGRGPGNQQ 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1326 996 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Dere08g1326 996 CDD SPOC_FPA-like 520 640 - -
Dere08g1326 996 SMART rrm1_1 107 174 IPR000504 GO:0003723
Dere08g1326 996 SMART rrm1_1 30 97 IPR000504 GO:0003723
Dere08g1326 996 SMART rrm1_1 227 295 IPR000504 GO:0003723
Dere08g1326 996 CDD RRM_SF 108 174 - -
Dere08g1326 996 FunFam Flowering time control protein FPA 22 103 - -
Dere08g1326 996 Gene3D - 17 102 IPR012677 -
Dere08g1326 996 MobiDBLite consensus disorder prediction 404 418 - -
Dere08g1326 996 MobiDBLite consensus disorder prediction 386 433 - -
Dere08g1326 996 SUPERFAMILY RNA-binding domain, RBD 16 103 IPR035979 GO:0003676
Dere08g1326 996 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Dere08g1326 996 FunFam Flowering time control protein FPA isoform A 104 218 - -
Dere08g1326 996 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 99 - -
Dere08g1326 996 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 94 IPR000504 GO:0003723
Dere08g1326 996 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Dere08g1326 996 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Dere08g1326 996 CDD RRM_SF 31 97 - -
Dere08g1326 996 SUPERFAMILY RNA-binding domain, RBD 105 297 IPR035979 GO:0003676
Dere08g1326 996 MobiDBLite consensus disorder prediction 193 223 - -
Dere08g1326 996 Gene3D - 217 303 IPR012677 -
Dere08g1326 996 FunFam flowering time control protein FPA 219 313 - -
Dere08g1326 996 MobiDBLite consensus disorder prediction 754 786 - -
Dere08g1326 996 MobiDBLite consensus disorder prediction 386 402 - -
Dere08g1326 996 MobiDBLite consensus disorder prediction 195 211 - -
Dere08g1326 996 Pfam SPOC domain 516 632 IPR012921 -
Dere08g1326 996 Gene3D - 103 213 IPR012677 -
Dere08g1326 996 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1326 Dere-ChrDere08 17431966 17439998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1326 11 289 Eukaryotic Initiation Factors Gene Family AT4G34110 25.329 1.37e-13 73.2