Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1317 ATGCTTAACAGCTTCTCAGAGCTCATGAACCTTGATGCTTGTGGTGGTTGGTACTGTAGTCCATCAATGACAGATTATCAGATATTGGCTAATGAGCTTTCATCATCTTTCTCAGCATCAAATATATCGCCTGATGAATTTGATTTGCTGGACCAGAGCAGTGTGCCATTCTTTACAACTGATGTTGGTGGAAATTACAACGCTTTGAGAAGTTCCTCTGGTCTTCAGGAGAAAGTTCAAATTCAGCAAATGGACGCTCAACTTGGGTTCTCAAATGATGCAAATTACTTGAATTCTAAACAACAAATAAATGGCTCTTCTCAACAACTTCATACCTCAGACATGGGGAATTATACAATCTGCAGGTCACCTGCTTGGTCACTTGATCAGAGAATGCTGAGGGCTTTGTCCTTCTTCAGGGAGTCCGCCGGTGGGGGAATATTGGCACAAGTTTGGGTACCGATAAAGCTTGGTGATCAATTTATCTTAAGCACTAGTGAGCAACCTTATTTGCTAGACCAAATGCTTACAGGCTATCGTGAGGTGTCAATGACATTTAAATTCCCTGCAGAGGGAAAACCAGGTTCTTTTCCAGGACTTCCTGGTCGGGTGTTTCTCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACCATAAGACTGAGTACTTAAGGGTGGAGCATGCGATCAATCATGAGGTTCGTGGATCAATTGCTGTTCCAATATTTGATCCCCACTCTGAAATGTCGTGCTGTGCTGTATTGGAACTTGTCACTACACTGGAGAAGTCGAATTTTGATAGAGAATTTGAAAATGTTTGTCATGCACTACAAGTCGTTGATTTAAGGACTACTAGGCTTCCTCGACTTCTTACGAAGTGTCTCTCAAATACCAAAAGAGATGGTATAACTGAGATAACAGATGTATTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCGCTGACATGGATTCCCTGCTGTTACACTGAAGGAAATAGAGATGAAACTATGAGGACACAAAATAAAAAGGGCGATCTCAATTCTAGTAAGAAATATGTACTATGCATTGAAGAATCAGCTTGCTGCATAAATGATAAAGTGATGGAAGGATTTGTTCAAGCATGCGCTGAACATCATCTTGAGGAAGGGCAAGGTATTGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATCCTGACGTGAAGGCATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTTTAGTTTGAGAGCTGCAGTTGCAATCAGGCTTAGGAGCACCTGCACTGATGATGATGATTACATATTAGAATTCTTTCTTCCAGTCAATATGAGAGGGAGTTCAGAACAGCAACTTTTATTGGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTATGAGGACAATCTCAGATGCTGAACTATCAGAAATAGTAGGCTCACCTGTAAGGTTTCAAAGGAAAAAATTCCCAGGTGTTTTTCCTATGTCTAGGAGAAACTTGCGAATAGCATCGACAGATGGTGACCCTGATTCAGTGAGGAAGATGCCCTTGCAGGCATCTAACCTGAGAAACAATGGTTTTAAAGCTGATCATAACCAGGCAATGAGTGGATCAAGAAGGCTGGTTCAGAAAAAGAGAAATAAAGTGAAGAATATCAGCTTTAATGTTCTCCAGCAACACTTTTCTGGTAGTTTGAAGGATGCTGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAAAGAATATGCAGGCAACATGGCATTTCTAGATGGCCATCCCGTAAGATTAATAGAGTGAATCGCTCAATCAAGGATATTCGGGCTGTGCTTGGCTCTGTTCAGGGAGTGGAAGGAGGGTTCAAGTTTGACCCTTCTAAGGAGGGGTTTGGGGCTGGAAGTTCAATCATCCAAGAATCTGATGCACGTAGAAGTCTTCCCCTCCGTGAGAACTGTATGACTGTAAAGGACCCAACACAAGATGCAGTCTCAGTACCTCCAGCACCTTGTAGTGCAGATGAGACCTCAACAATCGAATTGGAGGATGACGTCATGTATTTGGTAAGAAACCAGCTTGTGCCCTCAAGAAGTGTGCTTATTCCTAATTCATGTGAGGGAGAGTGGAAGAAAGTCATTGATTCTTCCGTTGATTGTGATGAAGCTTCAATTTCAATGGCCATGGGTGACACTGACAGATCATGCCAAACATCTGGACTTGGGACCAAGGCTCAGGATTGTCCTGAACAAGCCAGTCTGAACAAGGGTTGTCCAAGAGTTAAAAATTCTAGCCACCAGAGTTCAAGTCCTTTGATTGCTGATGTGATGGAAAATGGGGCAGATAAGGACGATGAAGGGGTGGAGCATGAGCCCCTTGCTTCTTCGAGCATGATGGACTCATCCAATGATTTGAGTTTTTGGTCAGACTCTCAGAGCATTGAGAACCAGAGGCATTCCAAAGTCAAATCAATTGGTCATGGTAATGTGTCCAAAATTATTGTGAAAGCTACTTATAGAGAAGATACAATTCGTTTCAAGTTTGATCCGTCTGCAGCTTGTCATCAGCTATACGAAGAAGTTGCAACAAGATTTAAATTACAAAGTGGATTATTCCAGCTCAAATATTTAGATGAAGAAGAAGAATGGGTGATGTTGGTGGATGACTCGGATTTTCAGGAGTGTATAGAAATAATGGATGATAATGGGAGACGTTGTGTGAAGGTTCTTGTTCGTGATATGCCTCGTGTCTCAGTTGCTTCTTGGCAGGCAGCTCATAGGCATACATACACATGA 2817 0.4221 MLNSFSELMNLDACGGWYCSPSMTDYQILANELSSSFSASNISPDEFDLLDQSSVPFFTTDVGGNYNALRSSSGLQEKVQIQQMDAQLGFSNDANYLNSKQQINGSSQQLHTSDMGNYTICRSPAWSLDQRMLRALSFFRESAGGGILAQVWVPIKLGDQFILSTSEQPYLLDQMLTGYREVSMTFKFPAEGKPGSFPGLPGRVFLSKVPEWTSNVGYYHKTEYLRVEHAINHEVRGSIAVPIFDPHSEMSCCAVLELVTTLEKSNFDREFENVCHALQVVDLRTTRLPRLLTKCLSNTKRDGITEITDVLRAVCHAHRLPLALTWIPCCYTEGNRDETMRTQNKKGDLNSSKKYVLCIEESACCINDKVMEGFVQACAEHHLEEGQGIAGKALQSNHPFFYPDVKAYDISEYPLVHHARKFSLRAAVAIRLRSTCTDDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSMRTISDAELSEIVGSPVRFQRKKFPGVFPMSRRNLRIASTDGDPDSVRKMPLQASNLRNNGFKADHNQAMSGSRRLVQKKRNKVKNISFNVLQQHFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINRVNRSIKDIRAVLGSVQGVEGGFKFDPSKEGFGAGSSIIQESDARRSLPLRENCMTVKDPTQDAVSVPPAPCSADETSTIELEDDVMYLVRNQLVPSRSVLIPNSCEGEWKKVIDSSVDCDEASISMAMGDTDRSCQTSGLGTKAQDCPEQASLNKGCPRVKNSSHQSSSPLIADVMENGADKDDEGVEHEPLASSSMMDSSNDLSFWSDSQSIENQRHSKVKSIGHGNVSKIIVKATYREDTIRFKFDPSAACHQLYEEVATRFKLQSGLFQLKYLDEEEEWVMLVDDSDFQECIEIMDDNGRRCVKVLVRDMPRVSVASWQAAHRHTYT 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1317 938 SUPERFAMILY CAD & PB1 domains 839 921 - -
Dere08g1317 938 MobiDBLite consensus disorder prediction 789 808 - -
Dere08g1317 938 Gene3D - 836 920 - -
Dere08g1317 938 ProSiteProfiles RWP-RK domain profile. 544 629 IPR003035 -
Dere08g1317 938 Pfam PB1 domain 842 920 IPR000270 GO:0005515
Dere08g1317 938 SMART PB1_new 839 921 IPR000270 GO:0005515
Dere08g1317 938 ProSiteProfiles PB1 domain profile. 839 921 IPR000270 GO:0005515
Dere08g1317 938 Pfam RWP-RK domain 561 608 IPR003035 -
Dere08g1317 938 PANTHER PROTEIN NLP8 75 921 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1317 Dere-ChrDere08 17310112 17314904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1317 119 928 NLP Transcription Factor Family AT3G59580 49.757 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere08g1317 PB1 1.7e-15 CL0072